Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3539 107 2e-18 seq181 89.7 4e-13 seq171 82.4 7e-11 >seq3539 Length=40568 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || |||||||| ||||| |||||||| ||||| ||| ||||| Sbjct 16752 GATAAAGAAGGCATCCCTCCTGATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAA 16811 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| || |||| | || ||||| || ||||| ||||| || ||||||||| ||||||| Sbjct 16812 GATGGCAGAACTCTTGCGGATTATAACATTCAAAAGGAGTCCACTCTTCACCTGGTGTT 16870 >seq181 Length=165841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || |||||||| || ||||| ||| || ||| | | Sbjct 158884 ATGCAGATCTTCGTCAAGACTTTGACGGGGAAGACCATCACCCTGGAGGTGGAGAGCTCC 158825 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | | ||| || ||| ||||| || || | ||| ||||| Sbjct 158824 GACACGATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGGATTCCCCCGGATCAG 158765 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || |||| ||| || ||| |||| ||||||||| Sbjct 158764 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCAGGACTCTGGCGGATTACAAT 158705 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || |||||||| || |||||||| |||| Sbjct 158704 ATCCAGAAGGAGTCCACTCTTCATCTGGT 158676 >seq171 Length=169594 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || | || ||||||||||| || ||| |||| | | Sbjct 166268 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTCTGGAAGTGGAAAGCTCT 166327 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | || |||||| || ||||| ||| | ||| ||| || Sbjct 166328 GACACGATTGATAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCCCCAGACCAG 166387 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| || || || || || ||| | || | ||||| || ||| Sbjct 166388 CAGAGATTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTCGCCGACTATAAT 166447 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || ||||| ||| ||||| Sbjct 166448 ATTCAGAAGGAGTCCACTCTGCACTTGGTG 166477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426728801944160