Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3539 116 3e-21 seq181 93.3 3e-14 seq14767 87.8 1e-12 seq5329 82.4 6e-11 >seq3539 Length=40568 Score = 116 bits (128), Expect = 3e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || |||||||| ||||| |||||||| ||||| ||||||||| Sbjct 16752 GATAAAGAAGGCATCCCTCCTGATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAA 16811 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| || |||| | || ||||| || ||||||||||| || ||||||||| ||||||| Sbjct 16812 GATGGCAGAACTCTTGCGGATTATAACATTCAAAAGGAGTCCACTCTTCACCTGGTGTT 16870 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 25130 TAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA 25189 ||||||||| | || |||||||| ||||| || ||||| ||||| ||||||||||| Sbjct 20132 TAAAGAAGGCATCCCTCCTGATCAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGA 20191 Query 25190 TTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 | || |||| | || ||| | || |||| |||||| || ||||||||| Sbjct 20192 TGGCAGAACTCTTGCGGATGATAACATTC-AAAGGAGTCGACTCTTCAC 20239 >seq181 Length=165841 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || |||||||| || ||||| ||| || ||| | | Sbjct 158884 ATGCAGATCTTCGTCAAGACTTTGACGGGGAAGACCATCACCCTGGAGGTGGAGAGCTCC 158825 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||||| || ||| ||||| || || | ||| ||||| Sbjct 158824 GACACGATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGGATTCCCCCGGATCAG 158765 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || || ||||| ||| || ||| |||| ||||||||| Sbjct 158764 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCAGGACTCTGGCGGATTACAAT 158705 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || ||||| || |||||||| |||| Sbjct 158704 ATCCAGAAGGAGTCCACTCTTCATCTGGT 158676 >seq14767 Length=9121 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||| ||||| || ||||| ||||| |||||||||||| ||||||| | || ||| Sbjct 1122 GATCAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAAAACTCTTGCGGAT 1063 Query 25209 TACAATATTCAAAAGGAATCTACTCTTC 25236 || || |||| |||||| || ||||||| Sbjct 1062 TATAACATTC-AAAGGAGTCGACTCTTC 1036 >seq5329 Length=29078 Score = 82.4 bits (90), Expect = 6e-11 Identities = 85/109 (78%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 25130 TAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA 25189 ||||||||| | || |||||||| |||| || ||||| ||||| ||||||||||| Sbjct 25848 TAAAGAAGGCATCCCTCCTGATCAACA--GACTGATTTTTGCTGGCAAGCAATTGGAAGA 25791 Query 25190 TTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 | || |||| | || ||||| || |||| |||||| || ||||||||| Sbjct 25790 TGGCAGAACTCTTGCGGATTATAACATTC-AAAGGAGTCGACTCTTCAC 25743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409255412355008