Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3539 107 3e-18 seq277752 104 3e-17 seq13688 104 3e-17 seq382 104 3e-17 seq14767 100 4e-16 seq464 100 4e-16 seq181 98.7 1e-15 seq33014 91.5 2e-13 seq18103 91.5 2e-13 seq10513 89.7 8e-13 seq5329 89.7 8e-13 seq9344 87.8 3e-12 seq8761 86.0 9e-12 seq135 86.0 9e-12 >seq3539 Length=40568 Score = 107 bits (118), Expect = 3e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||| || || || || || |||| || | ||| || || ||| || || |||||||| Sbjct 16888 GTTCCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGA-ATGTTATAATC 16830 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | ||||||||||| ||| || ||||| || |||||||| |||| ||| || ||||| || Sbjct 16829 CGCAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGG 16770 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 ||| || ||||||||||| || Sbjct 16769 AGGGATGCCTTCTTTATCCTG 16749 Score = 100 bits (110), Expect = 4e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || ||| | | || | ||| || || || || || |||| ||| Sbjct 20265 GTTCCTCCCCTCAGCCTCAATGCTAGGTGAAGAGTCGACTCCTTTGA-ATGTTATCATCC 20207 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||||| ||| || ||||| || ||||||||||||| ||| || ||||| ||| Sbjct 20206 GCAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAGTCTCTGTTGATCAGGA 20147 Query 146168 GGAATTCCTTCTTTA 146182 || || ||||||||| Sbjct 20146 GGGATGCCTTCTTTA 20132 >seq277752 Length=210 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||||| ||||||||||| ||| || ||||| || || |||||||||||||| Sbjct 11 ATGTTATAATCTGCAAGAGTTCTGCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTC 70 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| || ||||| ||||| || Sbjct 71 TGCTGATCAGGAGGGATGCCTTCCTTATCCTG 102 >seq13688 Length=10182 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || | || |||| || | ||| || || || || ||||||||| Sbjct 6966 GTTCCTCCCCTCAGCCGCAAAACCAGGTGAAGAGTTGACTCCTTTTGGATGTTATAATCT 6907 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||||| || || ||||| || || |||||||||||||| |||||||| ||| Sbjct 6906 GCAAGAGTTCTGCCTTCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGCTGATCAGGA 6847 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 6846 GGGATGCCTTCCTTATCCTG 6827 >seq382 Length=131996 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || | || || || | || | ||| || ||||| |||||||||||| Sbjct 52888 GTTCCTCCCCTCAACCTCAAAACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCT 52829 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || ||||| || ||||||||||||| ||| |||||||| ||| Sbjct 52828 GCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGA 52769 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 52768 GGGATGCCTTCCTTATCCTG 52749 >seq14767 Length=9121 Score = 100 bits (110), Expect = 4e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || ||||| ||||| | | | ||| || || || || || |||||||| Sbjct 1008 GTTCCTCCCCTCAGTCTCAATACTAGGGGAAGAGTCGACTCCTTTGA-ATGTTATAATCC 1066 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| ||| ||| || ||||| || ||||||||||||| ||| || ||||| ||| Sbjct 1067 GCAAGAGTTTTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAGTCTCTGTTGATCAGGA 1126 Query 146168 GGAATTCCTTCTTTA 146182 || || ||| ||||| Sbjct 1127 GGGATGCCTACTTTA 1141 >seq464 Length=123775 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| || | ||| || || || || ||||||||| Sbjct 13724 GTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGAGTTGACTCCTTTTGGATGTTATAATCT 13783 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| ||| | ||| || ||||| || || |||||||||||||| || ||||| ||| Sbjct 13784 GCAAGAGATCTACCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 13843 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 13844 GGGATGCCTTCCTTATCCTG 13863 >seq181 Length=165841 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || |||| ||||| || ||||| ||||| || ||||| ||||| | Sbjct 136756 CCACCCCTCAGCCTTAGAACCAAGTGCAAAGTGGATTCCTTCTGGATATTGTAATCGGCG 136815 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| || || | ||| ||||| || || ||||| || ||||| ||||| ||| Sbjct 136816 AGGGTTCTGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 136875 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 136876 ATTCCTTCCTTATCCTG 136892 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||| ||| | ||| || || || ||||| ||||| | Sbjct 158658 CCACCGCGAAGCCTGAGGACCAGATGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCC 158717 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || || || ||||| ||||| ||||| || ||||||||||| ||| Sbjct 158718 AGAGTCCTGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGGGGA 158777 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 158778 ATCCCCTCCTTATCCTG 158794 >seq33014 Length=2228 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || | || || || |||| || | ||| || ||| | || ||||||||| Sbjct 1655 GTTCCTCCCCACAGCCTCAAAACCAGGTGAAGAGT-GACTCTGTTTGGATGTTATAATCT 1713 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || ||||| | || |||||||||||||| || ||||| ||| Sbjct 1714 GCAAGAGTTCTACCATCTTCCAATTGATAACCGGCAAAAATCAATCTCTGTTGATCGGGA 1773 Query 146168 GGAATTCCTTCTTTATCTTG 146187 | || ||||| |||||||| Sbjct 1774 AGGATGCCTTCCTTATCTTG 1793 >seq18103 Length=6506 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||||| ||||||||| | ||| || ||||| | || |||||||||||||| Sbjct 3831 ATGTTATAATCTGCAAGAGTTCTCC-ATCTTCCAATTGCTAACCGGCAAAAATCAATCTC 3889 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| ||| |||| ||||| |||||||| Sbjct 3890 TGTTGATCAGGAAGAATGCCTTCCTTATCTTG 3921 >seq10513 Length=14544 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || | || || | ||| || || || || ||||||||| Sbjct 3636 GTTCCTCCCCTCAGCCTCAAAAACAGGTGAAGAGTTGACTCATTTTGGATGTTATAATCT 3577 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||||| ||| || ||||| || | |||||||||||||| |||||||| ||| Sbjct 3576 GCAAGAGTTCTGCCATCTTCCAATTGCTTACAGGCAAAAATCAATCTCTGCTGATCAGGA 3517 Query 146168 GG 146169 || Sbjct 3516 GG 3515 >seq5329 Length=29078 Score = 89.7 bits (98), Expect = 8e-13 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| || || || || || |||||||| | ||||||||||| ||| || ||||| || || Sbjct 25749 AGTCGACTCCTTTGA-ATGTTATAATCCGCAAGAGTTCTGCCATCTTCCAATTGCTTGCC 25807 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTA 146182 ||||||||||| || || ||||| ||||| || ||||||||| Sbjct 25808 AGCAAAAATCAGTC--TGTTGATCAGGAGGGATGCCTTCTTTA 25848 >seq9344 Length=16620 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || || || || |||| | ||| || || ||| || ||||||||| Sbjct 5527 GTTCCACCCCTCAGCCTCAAAACCAGGGAAAGAGTTGACTCCTTATGGATGTTATAATCT 5468 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || ||||| || || ||||||||||||| || ||| ||||| Sbjct 5467 GCAAGAGTTCTACAATCTTCCAATTGCTTACCGACAAAAATCAATCTCTGTTGA-CCGGA 5409 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || | ||| | ||| || Sbjct 5408 GGGATGCTTTCCTGATCCTG 5389 >seq8761 Length=17858 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||||| |||| |||||| ||| || |||| || ||||||||||||||||| Sbjct 3098 ATCTTATAATCTGCAAGAATTCTGCCATCTTCCAATTAATTACCAGCAAAAATCAATCTC 3157 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| ||||| ||||| ||||| || Sbjct 3158 TGTTGATCAGGAGGGGAGCCTTCCTTATCCTG 3189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || | || || || |||| || ||||| || | ||| ||| | |||||||| Sbjct 17513 GTTCCTCCCCACAGCCTCAAAACCAGGTGAAAAGT-GACTGTTTGGATGT--TATAATCT 17569 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || ||||| | || |||||||||||||| | |||| || Sbjct 17570 GCAAGAGTTCTACCATCTTCCAATTGCTAACCGGCAAAAATCAATCTCTATTGATAACGA 17629 Query 146168 GGAATTCCTTCTTTATCTTG 146187 | || ||||| |||||||| Sbjct 17630 AGGATGCCTTCCTTATCTTG 17649 >seq135 Length=179161 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | || | ||| | ||| || || || ||||||||||| | | Sbjct 30471 CCACCACGAAGCCTGAGCACAAGATGAAGAGTCGACTCCTTCTGAATATTATAATCCGCA 30530 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || ||||| ||||| || || ||||| | |||||||| || ||| Sbjct 30531 AGAGTCCTGCCATCCTCCAATTGCTTTCCGGCGAAGATCAACCGCTGCTGATCTGGCGGA 30590 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || ||||| Sbjct 30591 ATGCCCTCCTTGTCTTG 30607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740665013002240