Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3539 100 2e-16 seq464 91.5 1e-13 seq14767 87.8 1e-12 seq55 86.0 5e-12 >seq3539 Length=40568 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| |||||| || || || ||||||||||| || || || Sbjct 16886 TCCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCGC 16827 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| ||||| ||| |||| ||||| |||||||| || Sbjct 16826 AAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGG 16767 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 16766 GATGCCTTCTTTATC 16752 >seq464 Length=123775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| |||||| ||||| || ||||| ||||| || || || Sbjct 13726 TCCTCCCCTCAGCCTCAAAACCAGGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGC 13785 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | | | ||| |||||||||||| || || ||| | || | ||| |||||||| || Sbjct 13786 AAGAGATCTACCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGG 13845 Query 18218 CACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 13846 GATGCCTTCCTTATC 13860 >seq14767 Length=9121 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| ||||| | ||| | | |||| || || || ||| ||||||| || || || Sbjct 1010 TCCTCCCCTCAGTCTCAATACTAGGGGAAGAGTCGACTCCTTT-GAATGTTATAATCCGC 1068 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||||| | |||||||||||| ||||| ||| | || ||||| |||||||| || Sbjct 1069 AAGAGTTTTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAGTCTCTGTTGATCAGGAGG 1128 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||| | ||| | || | | || ||||| | | | || |||| | ||| Sbjct 1129 GATGCCTACTTTAGCCTGGATCT-TGGCTTTGACATTGTCGATGGTATCACTGCCCTCAA 1187 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| |||||| | || | || | |||||| | ||||||||||| || Sbjct 1188 CCTCAAGAGTGATGGTCTTCCTAGTTAGTGTTTTCATGAAAATTTGCATGTT 1239 >seq55 Length=242041 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| ||| || ||||| || ||||| ||||||||||| || Sbjct 38178 CCACCACGCAGACGAAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCT 38237 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | || ||||| ||| |||| || | || || || ||| Sbjct 38238 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGA 38297 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| || | ||| || | ||| |||||| | ||| Sbjct 38298 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACC 38357 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | |||||||| | || || || ||||||||||| Sbjct 38358 TCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 38404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377920629236640