Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12296 82.4 1e-10 >seq12296 Length=11864 Score = 82.4 bits (90), Expect = 1e-10 Identities = 146/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA--CTCTCAACATT 63470 || |||| ||| |||||||| | || | || || | |||||||| ||| || |||| Sbjct 7264 CCTTTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTATAAAAACTCGCAGCATT 7205 Query 63471 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA 63530 ||| | || || | ||| | ||||| || || ||||| | ||| ||| |||||| Sbjct 7204 GGACTGATGCCAATGGATGTCCCATTTGTTCCATGAATATAACTGCCAGTGGTACGAATG 7145 Query 63531 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63590 || || || | ||| |||||||| || ||| ||| | || ||| || || Sbjct 7144 TTGTGAACAGAGACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAG 7085 Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGAT 63622 || ||||| ||| |||| ||||||||||| || Sbjct 7084 GTATCATATATGACTTCGATGCTATCATCTAT 7053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627393809948160