Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq55 102 8e-17 seq3539 91.5 1e-13 seq135 89.7 5e-13 seq56994 86.0 6e-12 seq35007 86.0 6e-12 seq459 86.0 6e-12 seq1675 84.2 2e-11 seq181 84.2 2e-11 seq707 82.4 8e-11 seq400 82.4 8e-11 >seq55 Length=242041 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || || || | ||| | ||| ||||| | || ||||| ||||| ||||| || || ||| Sbjct 38178 CCACCACGCAGACGAAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCT 38237 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || || ||||| || |||||| |||||||||| ||||| || || || Sbjct 38238 -AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGG 38296 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| || || | | || | ||||| | | |||||| Sbjct 38297 AATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 38356 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||||||||| | || || ||||| |||||||| Sbjct 38357 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 38404 >seq3539 Length=40568 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || | ||||| || ||||| ||||||||||||||||| | || || || Sbjct 16871 CAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCGCAAGAGTTCTGCCATC 16812 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | || || |||||| ||||||| | || ||||| ||||| ||||||||||| || Sbjct 16811 TTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGGATGCCTTCTTTATC 16752 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || ||| | | || | || ||| | ||| ||||| | || | || Sbjct 16751 CTGGATCTTGGCTTTGACATTGTCGATGGTATCGTTACCCTCAACCTCGAGAGTGATGGT 16692 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || || | ||||| ||||| |||||||| Sbjct 16691 CTTCCCAGTTAGAGTTTTCACGAAAATTTGCAT 16659 >seq135 Length=179161 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | || | ||| |||||||| || || Sbjct 30957 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCG 31016 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || || || ||||| || ||||| |||||| || Sbjct 31017 GCGAAGATGAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTG 31076 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||| | ||| | ||||||||||||| ||| Sbjct 31077 ACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTT 31136 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 31137 TTGACGAAGATCTGCAT 31153 >seq56994 Length=1141 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 139570 AGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGC 139629 |||||| || || ||||| || ||| | |||| ||| |||||||| ||||| || Sbjct 1 AGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGC 60 Query 139630 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAG 139689 |||| || | ||||| || ||||| ||||| || ||||| ||| || || | Sbjct 61 GAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 120 Query 139690 CTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTT 139749 | || | ||||| | | ||| ||||| | ||| | ||||||||||||| ||||| Sbjct 121 GTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTTTT 180 Query 139750 TACGAATATTTGCAT 139764 ||||| || ||||| Sbjct 181 CACGAAGATCTGCAT 195 >seq35007 Length=2034 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||||||||| || |||| || || || || || || Sbjct 1862 GTAGACTCCTTCTGAATGTTATAATCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCG 1803 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||| | ||||| || || || || ||||| ||||| ||| | |||| ||| Sbjct 1802 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTC-TTGAATCTTTGCTTT 1744 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || |||| | ||| ||||| | || | |||||||| ||||| || Sbjct 1743 GACATTGTCAATGGTATCGGAGCTCTCAACCTCCAAAGTGATTGTCTTGCCTGTCAAGGT 1684 Query 139747 TTTTACGAATATTTGCATA 139765 || || ||||| |||||| Sbjct 1683 CTTGACAAATATCTGCATA 1665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || || || |||| || | |||||||| ||||| ||||| || || Sbjct 1593 GTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGGATGCCCTCCTT 1534 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||||| | ||| ||||| | ||| | Sbjct 1533 GTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGGGTGAT 1474 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| |||||||| ||||| Sbjct 1473 GGTCTTGCCGGTTAGGGTTTTCACGAATATCTGCAT 1438 >seq459 Length=124062 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || || || | || ||||| || |||||||| || || | Sbjct 120812 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCTGCC 120753 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| ||||| || || ||| |||| || | ||||| || || || Sbjct 120752 AGTGTCCTACCATCTTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 120693 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| || | | || | ||| || | | |||||| Sbjct 120692 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTATCAGAGCTTTCCACC 120633 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | || || || || |||||||| Sbjct 120632 TCCAAGGTGATTGTCTTCCCAGTAAGGGTCTTCACAAAGATTTGCAT 120586 >seq1675 Length=66877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | ||||||||||| || || ||||||||| | Sbjct 7436 CCACCGCGGAGACGAAGAACAAGGTGCAGGGTAGACTCTTTCTGGATATTATAATCGGCC 7377 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | || || | || || || ||| ||||||| | ||||||||| || || Sbjct 7376 AATGTACGACCATCCTCCAATTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCCGGCGGG 7317 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | ||| | | || | || |||| | |||||| Sbjct 7316 ATACCCTCCTTATC-CTGAATCTTAGCTTTGACATTGTCAATGGTATCGGAGCTCTCCAC 7258 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| ||||| || || || || || ||||| Sbjct 7257 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 7210 >seq181 Length=165841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || ||||| |||||||| || ||||| ||| || | || || ||| Sbjct 136330 GTAGACTCCTTCTGAATATTATAATCCGCCAATGTGCGACCGTCCTCCAATTGCTTTCCA 136389 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || || || || || || ||||| ||| | |||| ||| Sbjct 136390 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCT-TGAATCTTTGCTTT 136448 Query 139688 AGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | ||||||||||| || | |||||| || |||| || Sbjct 136449 GACATTGTCAATAGTGTCAGAACTCTCCACCTCAAGCGTGATCGTCTTCCCCGTCAGAGT 136508 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 136509 CTTCACGAAGATCTGCAT 136526 >seq707 Length=103418 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 139570 AGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGC 139629 |||| |||| || ||||| || ||| || |||| |||||||||||| || || || Sbjct 63106 AGAC-CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTTCCGGC 63048 Query 139630 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAG 139689 | |||| ||| ||||| || ||||| |||||||| ||||| ||| || || | Sbjct 63047 GAAAATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC 62988 Query 139690 CTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTT 139749 | || | |||||| || ||| ||||| | || | ||||| || || | ||||| Sbjct 62987 ATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTT 62928 Query 139750 TACGAATATTTGCAT 139764 ||||| || ||||| Sbjct 62927 CACGAAAATCTGCAT 62913 >seq400 Length=129899 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||||||||| || |||| || || || || || || Sbjct 14283 GTAGACTCCTTCTGAATGTTATAATCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCG 14342 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||| | ||||| || || || || ||||||||||| ||| | |||| ||| Sbjct 14343 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTC-TTGAATCTTTGCTTT 14401 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || |||| | ||| ||||| | || | |||||||| ||||| || Sbjct 14402 GACATTGTCAATGGTATCGGAGCTCTCAACCTCCAGAGTGATTGTCTTGCCTGTCAAAGT 14461 Query 139747 TTTTACGAATATTTGCATA 139765 || || || | |||||| Sbjct 14462 CTTCACAAAAACCTGCATA 14480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494154947302400