Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12296 100 4e-16 seq193897 89.7 7e-13 >seq12296 Length=11864 Score = 100 bits (110), Expect = 4e-16 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA--CTCTCAACATTGGA 80145 |||| ||| |||||||| | || | || || | |||||||| ||| || ||||||| Sbjct 7261 TTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTATAAAAACTCGCAGCATTGGA 7202 Query 80146 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 80205 | || ||| ||||||| ||||| || || ||||| || ||| ||| |||||| || Sbjct 7201 CTGATGCCAATGGATGTCCCATTTGTTCCATGAATATAACTGCCAGTGGTACGAATGTTG 7142 Query 80206 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 80265 || || | ||| |||||||| || ||| ||| | || ||| || || ||| Sbjct 7141 TGAACAGAGACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAGGTA 7082 Query 80266 TCATAGATGCCCTCTATGCTATCATCAAT 80294 ||||| ||| | || ||||||||||| || Sbjct 7081 TCATATATGACTTCGATGCTATCATCTAT 7053 >seq193897 Length=263 Score = 89.7 bits (98), Expect = 7e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| ||| |||||||| | || | ||| || | |||| |||||| | ||| ||||| Sbjct 116 TTTGCCTCCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGTAGCATCGGAAT 175 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 || ||||||||||| ||||| || || ||||| || ||| |||||||||| || Sbjct 176 GATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTG 235 Query 80208 AATTGATAGACCTATTCCCCCTGC 80231 || || | ||| |||||||| || Sbjct 236 AACAGAGACACCAATTCCCCCAGC 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715504614350080