Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3539 118 8e-22 seq4683 95.1 9e-15 seq1675 93.3 3e-14 seq459 82.4 6e-11 >seq3539 Length=40568 Score = 118 bits (130), Expect = 8e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| || ||||||| || | |||| ||||||||| | || ||||| | Sbjct 16885 CCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCGCA 16826 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||| ||||| ||||| |||| || ||||||||| | || Sbjct 16825 AGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGG 16766 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| ||||||| || | | || ||| | |||| || Sbjct 16765 ATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGTTACCCTCAACC 16706 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | || || || || || |||||||||||||| ||||||||||| || || Sbjct 16705 TCGAGAGTGATGGTCTTCCCAGTTAGAGTTTTCACGAAAATTTGCATGTTGTT 16653 >seq4683 Length=32477 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || || | ||| | ||||| ||| |||||| || | |||||| |||| Sbjct 3779 GCCACCGCGAAGCCTGAGCACGAGATGGAGAGTCGCCTCCTTCTGGATATTGTAGTCGGC 3720 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | |||||||||||| || || | | ||||||||| | || Sbjct 3719 GAGGGTCCGGCCGTCCTCAAGTTGTTTGCCGGCGAAGATGAGCCTCTGTTGATCTGGAGG 3660 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || |||| | ||||||| || | | ||||| ||| ||| | Sbjct 3659 GATGCCCTCCTTGTCCTGGATCTTCGCTTTGACGTTGTCGATGGTGTCAG-AGCTCTCCA 3601 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || |||||||| ||||||||||| || ||||| Sbjct 3600 CCTCAAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 3552 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | ||| || |||| || |||||| | || |||||||| || |||||||| Sbjct 3971 CTCTTTCTGGATATTATAGTCGGCCAGTGTACGACCATCCTCCAATTGCTTTCCGGCAAA 3912 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 |||| | ||| ||||| | ||| | ||| || || || |||| || |||||| Sbjct 3911 GATCAGCCTCTGCTGATCCGGCGGGATACCCTCCTTATC-CTGAATCTTAGCTTTGATAT 3853 Query 43037 TGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 || ||| || ||| ||| ||| || || | || || || || || || | ||| ||| Sbjct 3852 TGTCAATGGTATCGG-AGCTCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTC 3794 Query 43096 ACAAAAATTTGCAT 43109 |||||||| ||||| Sbjct 3793 ACAAAAATCTGCAT 3780 >seq1675 Length=66877 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | ||| ||||||| ||||||||| | || |||||||| || |||||||| Sbjct 7401 CTCTTTCTGGATATTATAATCGGCCAATGTACGACCATCCTCCAATTGCTTTCCGGCAAA 7342 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 |||| | || ||||| | ||| | ||| || || || |||| || ||||||| Sbjct 7341 GATCAGCCTTTGCTGATCCGGCGGGATACCCTCCTTATC-CTGAATCTTAGCTTTGACAT 7283 Query 43037 TGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 || ||| || ||| ||| ||| || || | || || || || || || | ||| ||| Sbjct 7282 TGTCAATGGTATCGG-AGCTCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTC 7224 Query 43096 ACAAAAATTTGCAT 43109 |||||||| ||||| Sbjct 7223 ACAAAAATCTGCAT 7210 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || || | ||| | ||||| ||| |||||| || | |||||| || | Sbjct 7209 GCCACCGCGAAGCCTGAGCACGAGATGGAGAGTCGCCTCCTTCTGGATATTGTAGTCAGC 7150 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | |||||||||||| || || | | ||||||||| | || Sbjct 7149 GAGGGTCCGGCCGTCCTCAAGTTGTTTGCCGGCGAAGATGAGCCTCTGTTGATCTGGAGG 7090 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || |||| ||||||| || | | ||||| ||| ||| | Sbjct 7089 GATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAG-AGCTCTCCA 7031 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || |||||||| ||||||||||| || ||||| Sbjct 7030 CCTCAAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 6982 >seq459 Length=124062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| ||||| | |||||| |||| |||| |||||| || | || || || | Sbjct 120357 GCCACCACGGAGTCTGAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGC 120298 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||| || |||| || | || ||||| ||||| |||| | ||| || || | || Sbjct 120297 AAGTGTCCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 120238 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | || || || || |||| | ||||||| || | | ||||| ||| | | | Sbjct 120237 AATTCCCTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAG-AGCTTTCAA 120179 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| || || || || ||||||||||| || ||||| Sbjct 120178 CCTCGAGGGTAATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 120130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379938628800576