Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6231 125 1e-23 >seq6231 Length=25150 Score = 125 bits (138), Expect = 1e-23 Identities = 381/582 (65%), Gaps = 14/582 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || || ||||||| || || ||||| || || || || Sbjct 18538 CACGCGAAGTCGCAGTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 18479 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| | || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 18478 CCGGGCATCAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 18420 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCAT 42239 ||| || || || |||||||| | | | ||| | ||| ||| | ||| Sbjct 18419 GATCCCCTCCACGCAGGCAAAGGCCACGATGCGCTC-CGCGAACGTCTCGGAGCCGTC-- 18363 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| | ||||| | ||||||||| || || || || || || | ||| Sbjct 18362 -GATCCAGCGCAGGGCCCACTGGGCCTTCTTGGCGACGCAGGGGATGGTGTCGACGGCCC 18304 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 |||||| | | || || | ||||||| ||| || |||| | ||| || |||| Sbjct 18303 GGAAGAGACGGCTCTTCTCGTCCGAGTCTTTAATATAGGTCTCGAGGAGAAGGCTGTACA 18244 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || ||||| ||||| ||||| || ||||| || |||||||| | ||||| | | Sbjct 18243 TCTCGGAATGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGA 18184 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 ||||||| || | || || | || | ||| ||| || || ||||| ||| | Sbjct 18183 CCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGAACGATGCCGTCGGAGGCGG 18124 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT 42539 | || || || | || || | || || | || || |||| |||| | | ||| | Sbjct 18123 CGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCCCCCGGGGTTAGGGTCTCCCAGT 18064 Query 42540 --CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 | || || | | || || || || | ||||| || || || || ||||| Sbjct 18063 GGCGCTG--GTCCTGGTCGAGGTCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTT 18006 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 || ||||| | |||||| || | || ||||| ||||| || Sbjct 18005 CTTGTACATTTCCCAGATCTCCGGGTACTGAATCGGGAACAT 17964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668556387902720