Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6231 150 3e-31 >seq6231 Length=25150 Score = 150 bits (166), Expect = 3e-31 Identities = 569/868 (66%), Gaps = 41/868 (5%) Strand=Plus/Plus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || || |||||||||||||| ||||| |||| || || ||||| | ||| |||||||| Sbjct 17985 GAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGAC 18044 Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TT 125131 || | |||||| | | | |||||||| | | | | | | |||| || Sbjct 18045 CTCGACCAGGACCAGCGCCACTGGGAGACCC-------TAACCCCGGGGGAGAAGCACTT 18097 Query 125132 TATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GT 125190 || | ||| | | |||||||| |||| |||||| || ||||| ||| ||||| | Sbjct 18098 CATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTCGAGAATCTCGC 18157 Query 125191 TGACACGATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCA 125248 | | || ||| | ||| | || || | |||| | ||||| || ||||| ||||| Sbjct 18158 CGGC-CGCTTCATGAAGGAGGT-ACAGGTCTCGGAGGCG-CGTGCCTTCTACGGCTTCCA 18214 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 ||| |||||||||| | || || || |||||| || | || | || ||| Sbjct 18215 GATCGCGATTGAGAACATCCATTCCGAGATGTACAGCCTTCTCCTCGAGACCTATATTAA 18274 Query 125309 CGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 || || | || || | | ||||| || ||||||| | || | | | Sbjct 18275 AGACTCGGA-CGAGAAGAGCCGTCTCTTCCGGGCCGTCGACACCATCCCCTGCGTCGCCA 18333 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427 | ||||| || |||| | || |||||||| | | | || | || ||| || | Sbjct 18334 AGAAGGCCCAGTGGGCCCTGCGCTGGATCGACGGCTCCGAGAC---GTTCGCGGAGCGCA 18390 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTT 125486 | ||||| || ||| ||| ||||| |||||||| ||||| || || |||| | || ||| Sbjct 18391 TCGTGGCCTTTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCTTCTGCG-CGATATTT 18449 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 |||||||| |||||||| | |||||||| ||||| | |||||||| || || ||| Sbjct 18450 TGGCTCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACGAGTTGATCTCGCGA 18509 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606 || || ||||||||||| ||||| | | | | ||| | | ||| || | ||| || Sbjct 18510 GATGAAGGCCTACACTGCGACTTCG-CGTGC--CTG---CTCTACTCGCT-CCTCCGGA- 18561 Query 125607 TGCAGATCCAGCGATGAAAAGGTCA--TCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 || || | || ||| || || | ||| || || ||| || || |||||| Sbjct 18562 TGAAGCT-CACCGAGGAGCGCGTGAAGTCA--ATCGTCCGCGACGCGGTTGAGATAGAGA 18618 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 |||||| | ||| | ||||| | | | |||| |||||| | | || ||| Sbjct 18619 GAGAGTTCGTGTGCGACGCGTTACCGTGCGCCTTAGTTGGAATGAACGGTGATCTGATGA 18678 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTT 125784 || ||||||| ||||| ||||| || | || || | |||| | | ||||| | Sbjct 18679 GCCAGTACATCGAGTTCGTGGCTGACAGGCTGGTGGGTGCGTTGGGATACGGGAAGATCT 18738 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA--CTAGAGGGTAAGACCAA 125842 || | || |||| || ||||||| ||| ||| || | || |||| |||||||| Sbjct 18739 ACGATGCGCAGAACCCATTTGATTGGATG--GAGCTGATTAGTCTTCAGGGGAAGACCAA 18796 Query 125843 CTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || ||||||| || | |||||| Sbjct 18797 TTTCTTTGAGAAGAGAGTTGGGGAGTAC 18824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738207307774720