Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3539 109 4e-19 seq171 96.9 3e-15 seq459 95.1 9e-15 seq181 89.7 4e-13 >seq3539 Length=40568 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||| || || || | ||||| ||||| || ||||| ||||| ||||| Sbjct 16885 CCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCGCA 16826 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| ||||| |||||||| | |||| | ||||| || || Sbjct 16825 AGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGG 16766 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || || ||| || ||| | || ||||||||| || || || Sbjct 16765 ATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGTTACCCTCAACC 16706 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || || |||||||| || ||||||||||| || Sbjct 16705 TCGAGAGTGATGGTCTTCCCAGTTAGAGTTTTCACGAAAATTTGCATGTT 16656 >seq171 Length=169594 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||||||||| || || ||||| || |||||||| || | | | || || Sbjct 166020 ACTAAATGAAGGGTCGACTCCTTTTGAATATTGTAATCAGCCAGGGTGCGGCCATCCTCA 165961 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | || | | || ||||| ||| || || |||||||| Sbjct 165960 AGTTGCTTTCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGG 165901 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| ||| | || ||||| ||| | | || || || ||||| |||||||| Sbjct 165900 ATCTTTGC-CTTCACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAGGTTATGGTTTT 165842 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| |||||||| Sbjct 165841 CCCAGTGAGAGTCTTAACAAAGATTTGCAT 165812 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || ||||| || ||||||||||| ||| | | | || Sbjct 166251 AACACCAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTGCGACCATCC 166192 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 ||||| ||||| || || | || | | || ||||| ||||| || || || || Sbjct 166191 TCTAACTGTTTCCCTGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCC 166132 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| ||||| ||| ||| | ||||| ||||| | |||| || || ||||| ||||| Sbjct 166131 TGAATCTTTGC-CTTGACATTATCTATTGTATCTGAACTTTCAACCTCCAAGGTGATGGT 166073 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| |||||||| Sbjct 166072 CTTTCCGGTGAGGGTTTTGACAAAGATTTGCAT 166040 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||| || || || | ||| | || || | || Sbjct 166698 TGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTCCCATCCTCAAGCTGC 166639 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| |||| | | || ||||| ||||| || || ||||| ||| ||| Sbjct 166638 TTTCCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTG 166579 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | |||||| | || || ||||| | | || || || || |||||||| || || ||| Sbjct 166578 GTTTTTACATTGTCAATCGTATCTGAACTCTCCACCTCCAAAGTAATGGTCTTCCCAGTC 166519 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || |||||| Sbjct 166518 AGAGTTTTAACAAAGATCTGCATA 166495 >seq459 Length=124062 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || ||||||||||| |||| | ||| | ||||| | || Sbjct 121016 TGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGAGTCCTCCCATCTTCAAGCTGC 120957 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| |||| | | || ||||| ||||| || || ||||| ||| ||| Sbjct 120956 TTACCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTT 120897 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || ||||| | | ||||| || ||||| ||||| || || || Sbjct 120896 GCT-TTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGT 120838 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 120837 GAGGGTCTTCACAAAAATCTGCAT 120814 >seq181 Length=165841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| |||| |||| ||| || || | ||||| || || || || ||||||||| Sbjct 136756 CCACCCCTCAGCCTTAGAACCAAGTGCAAAGTGGATTCCTTCTGGATATTGTAATCGGCG 136815 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| | ||| || || ||| | ||||| | || ||||| ||| Sbjct 136816 AGGGTTCTGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 136875 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||||| ||| || | || ||||| ||| | || || Sbjct 136876 ATTCCTTCCTTATCCTGGATTTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCAACC 136935 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || || || || || |||||||| || || || ||||| Sbjct 136936 TCGAGAGTGATCGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 136982 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| ||||| | | || || || || ||||| || || || |||||||||||| Sbjct 158884 TGCCACCCCTCAACCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGG 158943 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || |||| || ||||| || || ||| | ||||| | || ||||| | Sbjct 158944 CCAGGGTCCTGCCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGG 159003 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| || ||||| || || ||| || | || ||||| ||| | || | Sbjct 159004 GAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAA 159063 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | || ||||| || || || || ||||| || || || |||||| Sbjct 159064 CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCATA 159113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360820234827552