Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3539 116 3e-21 seq171 96.9 3e-15 seq181 89.7 4e-13 >seq3539 Length=40568 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | || ||| ||||||| ||| | || |||||||||||||| || ||||||| Sbjct 16887 TTCCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCG 16828 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| || | || |||| || || || ||| | || |||||||| ||||| | Sbjct 16827 CAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAG 16768 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| ||||| || || || ||| || | | ||| |||||| | ||| Sbjct 16767 GGATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGTTACCCTCAA 16708 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 |||| || ||||| || || |||| |||||| || ||||||||||| || Sbjct 16707 CCTCGAGAGTGATGGTCTTCCCAGTTAGAGTTTTCACGAAAATTTGCATGTT 16656 >seq171 Length=169594 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||| |||||||| || || || | ||| | | ||||| Sbjct 166477 CACCAAGTGCAGAGTGGACTCCTTCTGAATATTATAGTCGGCGAGTGTCCTTCCATCCTC 166418 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| |||| | ||||||||| || ||| | ||||||||||| Sbjct 166417 AAGCTGCTTACCTGCAAAAATCAATCTCTGCTGGTCTGGGGGAATACCCTCTTTGTCCTG 166358 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | || | ||| || ||| ||| | || ||||| Sbjct 166357 AATTTTAGCTTTCACATTATCAATCGT---GTCAGAGCTTTCCACTTCCAGAGTGATGGT 166301 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | || |||||||| |||||||| Sbjct 166300 TTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 166268 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||||||||||||||| |||| || | | ||||| || || || || Sbjct 166008 GTCGACTCCTTTTGAATATTGTAATCAGCCAGGGTGCGGCCATCCTCAAGTTGCTTTCCA 165949 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | |||||||||||||| || || | ||||||||||| || || || Sbjct 165948 GCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTC 165889 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | || ||| | ||| || | ||| |||||||| || || | ||| Sbjct 165888 ACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTC 165829 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| |||||||| Sbjct 165828 TTAACAAAGATTTGCAT 165812 >seq181 Length=165841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || |||||||||||||||| || || | ||||||| ||| || || Sbjct 158688 GTGGACTCCTTCTGGATATTGTAATCCGCCAGAGTCCTGCCATCCTCCAACTGCTTTCCG 158747 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||||||| ||| | ||||| || || ||| || || Sbjct 158748 GCAAAGATCAACCTCTGCTGATCCGGGGGAATCCCCTCCTTATCCTGAATCTTGGCCTTG 158807 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || ||| |||| || | ||| ||||| || || || ||||| Sbjct 158808 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAAAGTC 158867 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 158868 TTGACGAAGATCTGCAT 158884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413017244085568