Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq135 96.9 2e-15 seq3539 82.4 5e-11 >seq135 Length=179161 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 33172 TGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCC 33231 ||| ||||| ||||| || |||||||||| |||| || | || |||||||||||||| Sbjct 30272 TGTAGACTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATCCTCCAATTGCTTTCC 30331 Query 33232 ACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTT 33291 ||| || || | ||||| || | || || || || || || |||| | ||| Sbjct 30332 TGCAAAGATCAACCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCTTGAATCTTCGCTTT 30391 Query 33292 TACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGT 33351 || | | ||| || ||| | | ||| |||||||| |||||||| ||||| ||||| Sbjct 30392 GACATTGTCAATAGTATCGGAGCTCTCAACCTCCAGAGTGATCGTTTTCCCCGTCAGAGT 30451 Query 33352 TTTTACGAAAATTTGCAT 33369 || || || || ||||| Sbjct 30452 CTTCACAAAGATCTGCAT 30469 >seq3539 Length=40568 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/234 (68%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || | || |||||||| || | || ||||| ||||| || || ||||| | | Sbjct 16885 CCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCG-C 16827 Query 33203 AAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 || ||||| || ||||||||||| ||| ||| || | | || || || | Sbjct 16826 AA---GAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGG 16770 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||||||||| || ||| ||| || | | || || ||||| | Sbjct 16769 AGGGATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGTTACCCTC 16710 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||| || ||||| || || || || || |||||||| ||||||||||||||||| Sbjct 16709 AACCTCGAGAGTGATGGTCTTCCCAGTTAGAGTTTTCACGAAAATTTGCATGTT 16656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317581485877056