Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1675 114 9e-21 seq13557 102 6e-17 seq400 102 6e-17 seq181 98.7 7e-16 seq4683 96.9 2e-15 seq135 93.3 3e-14 seq3539 86.0 4e-12 seq171 84.2 2e-11 >seq1675 Length=66877 Score = 114 bits (126), Expect = 9e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || |||||||||||| ||| ||| |||| |||||||| ||||| ||||| Sbjct 7401 CTCTTTCTGGATATTATAATCGGCCAATGTACGACCATCCTCCAATTGCTTTCCGGCAAA 7342 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| || |||||| ||| | || | ||| || ||||| ||| || |||||| | Sbjct 7341 GATCAGCCTTTGCTGATCCGGCGGGATACCCTCCTTATCCTGAATCTTAGCTTTGACATT 7282 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | || || || || || || ||||||||||| Sbjct 7281 GTCAATGGTATCGGAGCTCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCAC 7222 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 7221 AAAAATCTGCATG 7209 >seq13557 Length=10351 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAA 43988 ||| |||||||| || ||||| | || || || |||| |||| ||| |||||||||| Sbjct 8490 CTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGC-CATCCTCCAGTTGCTTTCCTGCAA 8432 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | ||||||| |||||||| | || | ||| || || ||| ||| ||| |||||| Sbjct 8431 AGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGCTTTGACAT 8372 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 | ||| |||||| | ||| || || | || || ||||| || || | |||||||| Sbjct 8371 TGTCAATAGTATCCGAGCTCTCAACCTCCAGAGTGATCGTTTTCCCCGTCAGAGTCTTCA 8312 Query 44109 CAAATATTTGCAT 44121 |||| || ||||| Sbjct 8311 CAAAGATCTGCAT 8299 >seq400 Length=129899 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAA 43988 ||| || ||||| |||||||| | || || || |||| |||| ||| ||||| |||| Sbjct 14288 CTCCTTCTGAATGTTATAATCAGCCAAAGTGCGGC-CATCCTCCAGTTGCTTTCCGGCAA 14346 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | ||||||| ||||||||| | || | |||||||| ||| ||| ||| |||||| Sbjct 14347 AGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCTTTGACAT 14406 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 | ||| ||||| | ||| || || | || ||||| || || || |||||||||| Sbjct 14407 TGTCAATGGTATCGGAGCTCTCAACCTCCAGAGTGATTGTCTTGCCTGTCAAAGTCTTCA 14466 Query 44109 CAAATATTTGCAT 44121 |||| | ||||| Sbjct 14467 CAAAAACCTGCAT 14479 >seq181 Length=165841 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || |||||||||||||| ||| || | || |||||||| ||||| ||||| Sbjct 136335 CTCCTTCTGAATATTATAATCCGCCAATGTGCGACCGTCCTCCAATTGCTTTCCAGCAAA 136394 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| ||||||||| | || | || || || ||| ||| ||| |||||| | Sbjct 136395 GATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTTGCTTTGACATT 136454 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||| || | |||||| || | ||| || || || || || | ||||||||| Sbjct 136455 GTCAATAGTGTCAGAACTCTCCACCTCAAGCGTGATCGTCTTCCCCGTCAGAGTCTTCAC 136514 Query 44110 AAATATTTGCAT 44121 || || ||||| Sbjct 136515 GAAGATCTGCAT 136526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||| | ||| || || ||||| || ||||| |||||||| || || |||| || Sbjct 136545 CACAAGATGCAGAGTACTCTCCTTCTGAATGTTATAATCCGCTAGAGTCCGGCCATCCTC 136604 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||| || || || ||||| | || ||||||||| | || | || || || ||| Sbjct 136605 CAATTGCTTCCCAGCGAATATGAGCCTCTGCTGGTCCGGTGGAATCCCCTCCTTGTCTTG 136664 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| ||||| | ||| ||||| | |||||| || | || || || || Sbjct 136665 AATTTTCGCCTTGACGTTGTCAATCGTATCGGAGCTCTCCACCTCCAGAGTGATCGTCTT 136724 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||||||||| |||||||| Sbjct 136725 TCCTGTCAGAGTCTTCACAAAGATTTGCAT 136754 >seq4683 Length=32477 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || |||||||| ||| | | ||| |||| |||||||| ||||| ||||| Sbjct 3971 CTCTTTCTGGATATTATAGTCGGCCAGTGTACGACCATCCTCCAATTGCTTTCCGGCAAA 3912 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| || ||||| ||| | || | ||| || ||||| ||| || ||||| | Sbjct 3911 GATCAGCCTCTGCTGATCCGGCGGGATACCCTCCTTATCCTGAATCTTAGCTTTGATATT 3852 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | || || || || || || ||||||||||| Sbjct 3851 GTCAATGGTATCGGAGCTCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCAC 3792 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 3791 AAAAATCTGCATG 3779 >seq135 Length=179161 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAA 43988 ||| |||||||| || ||||| | || || || |||| |||||||| |||||||||| Sbjct 30278 CTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGC-CATCCTCCAATTGCTTTCCTGCAA 30336 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | ||||||| ||||| || | || | || || || ||| ||| || |||||| Sbjct 30337 AGATCAACCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCTTGAATCTTCGCTTTGACAT 30396 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 | ||| |||||| | ||| || || | || || ||||| || || | |||||||| Sbjct 30397 TGTCAATAGTATCGGAGCTCTCAACCTCCAGAGTGATCGTTTTCCCCGTCAGAGTCTTCA 30456 Query 44109 CAAATATTTGCAT 44121 |||| || ||||| Sbjct 30457 CAAAGATCTGCAT 30469 >seq3539 Length=40568 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| |||| || ||||||| || || ||| ||| |||||||| |||||||| Sbjct 16885 CCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCGCA 16826 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| |||||||| || || ||||| |||| | || || || |||| Sbjct 16825 AGAGTTCTGC-CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGG 16767 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATC--TGCCGGCTCC 44071 | ||||||||||| || || |||||| | | | ||||| | || ||| Sbjct 16766 GATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGTTACC--CTCA 16709 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 || |||| || || || || || |||| ||| ||||| || |||||||||| Sbjct 16708 ACCTCGAGAGTGATGGTCTTCCCAGTTAGAGTTTTCACGAAAATTTGCATGT 16657 >seq171 Length=169594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || ||| ||| || ||||||||||| ||| | | | |||| || Sbjct 166477 CACCAAGTGCAGAGTGGACTCCTTCTGAATATTATAGTCGGCGAGTGTCCTTCCATCCTC 166418 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || |||||||| ||||| | |||||||| | || | ||| ||||| || Sbjct 166417 AAGCTGCTTACCTGCAAAAATCAATCTCTGCTGGTCTGGGGGAATACCCTCTTTGTCCTG 166358 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| ||| || || ||| || || | ||||| || | || || ||||| Sbjct 166357 AATTTTAGCTTTCACATTATCAATCGTGTCAGAGCTTTCCACTTCCAGAGTGATGGTTTT 166298 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| | ||||| ||||| ||||||||| Sbjct 166297 GCCGGTGAGGGTCTTGACAAAGATTTGCATG 166267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353446407037056