Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3539 95.1 1e-14 >seq3539 Length=40568 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| | | ||||||||||| || || || || || ||||| ||| Sbjct 16897 TTGATCATAGTTCCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATG 16838 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 || ||||| | | |||| | |||||||||||| ||||| ||| | || || |||||| Sbjct 16837 TTATAATCCGCAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGT 16778 Query 20090 TGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCG 20149 ||||| || | ||||||||| || || || ||| || | | | | | |||| Sbjct 16777 TGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTGTCGATGGTATCG 16718 Query 20150 CCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || || | || ||||| || || || | ||||| || ||||||||||| Sbjct 16717 TTACCCTCAACCTCGAGAGTGATGGTCTTCCCAGTTAGAGTTTTCACGAAAATTTGCATG 16658 Query 20210 TT 20211 || Sbjct 16657 TT 16656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418012829104032