Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq707 96.9 3e-15 seq181 91.5 1e-13 seq135 89.7 4e-13 seq13557 84.2 2e-11 seq400 82.4 6e-11 seq171 82.4 6e-11 >seq707 Length=103418 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || ||||| || |||| || |||||||| ||| || || Sbjct 63103 CCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAA 63044 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || ||||||||||| ||| || | | ||||||||| || || ||||| | Sbjct 63043 ATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 62984 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| ||| | ||| ||||| || ||||| || || || || |||||||| Sbjct 62983 TCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACG 62924 Query 48716 AAAATCTGCATCGTG 48730 |||||||||||| || Sbjct 62923 AAAATCTGCATCTTG 62909 >seq181 Length=165841 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | ||||| | ||| || || || ||| |||||| || ||||||||||| ||| Sbjct 158886 CCACCCCTCAACCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCC 158945 Query 48560 AATTGTC--GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | ||| || ||||||||| ||||| ||| || | || || | |||||| ||| | Sbjct 158946 -AGGGTCCTGC-CGTCCTCCAATTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGG 159003 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| || || ||||| | | || ||||| |||| ||| Sbjct 159004 GAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTC 159061 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || |||||||| ||||| || || |||||||| Sbjct 159062 AACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 159112 >seq135 Length=179161 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | ||| | |||||| || |||||| ||||| || ||||| || Sbjct 30470 ACCACCACGAAGCCTGAGCACAAGATGAAGAGTCGACTCCTTCTGAATATTATAATCCGC 30529 Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 || ||| || | ||||||| ||||| ||| || | || || ||||||||||| | Sbjct 30530 -AAGAGTC-CTGCCATCCTCCAATTGCTTTCCGGCGAAGATCAACCGCTGCTGATCTGGC 30587 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676 || | | |||||||| ||||||| ||||| | | || ||||| | |||| Sbjct 30588 GGAATGCCCTCCTTGTCTTGAATTTTCGCCTTGACATTATCGATCGTATCAGAGCTCTCC 30647 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || || || ||||| || || |||||||| Sbjct 30648 ACCTCGAGAGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 30697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || ||||| ||||||||||||||||||||||||||| || | ||||||| ||| Sbjct 30267 TGGAGTGTAGACTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATCCTCCAATTGC 30326 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || || | ||||||||| || | | |||||||| ||| ||| Sbjct 30327 TTTCCTGCAAAGATCAACCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCTTGAATCTTC 30386 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 |||| | | || ||||||| ||| ||| | || || ||||| || || Sbjct 30387 GCTTTGACATTGTCAATAGTATCGGAGCTCTCAACCTCCAGAGTGATCGTTTTCCCCGTC 30446 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||| |||||||| |||||||| Sbjct 30447 AGAGTCTTCACAAAGATCTGCAT 30469 >seq13557 Length=10351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||||||||||||||||||||| || | |||||||| ||||| || | | Sbjct 8490 CTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCTGCAAA 8431 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAG 48653 || || | |||||| || || | || |||||||| ||| || ||| |||| | Sbjct 8430 GATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTT-TGCTTTGACAT 8372 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||| | ||| ||| | || || ||||| || || ||||| |||| Sbjct 8371 TGTCAATAGTATCCGAGCTCTCAACCTCCAGAGTGATCGTTTTCCCCGTCAGAGTCTTCA 8312 Query 48714 CAAAAATCTGCAT 48726 |||| |||||||| Sbjct 8311 CAAAGATCTGCAT 8299 >seq400 Length=129899 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || ||||| |||||| |||||||| ||||||||||| || | |||||||| ||| Sbjct 14277 TGGAGTGTAGACTCCTTCTGAATGTTATAATCAGCCAAAGTGCGGCCATCCTCCAGTTGC 14336 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || | |||||| ||| || | | ||| ||||| ||| || Sbjct 14337 TTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCTTGAATCTT- 14395 Query 48644 TGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| |||| | | |||||||||| ||| ||| | || || || || || || Sbjct 14396 TGCTTTGACATTGTCAATGGTATCGGAGCTCTCAACCTCCAGAGTGATTGTCTTGCCTGT 14455 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||| |||||||||| |||||| Sbjct 14456 CAAAGTCTTCACAAAAACCTGCAT 14479 >seq171 Length=169594 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 |||||||||||| || |||||||||||| ||||||||||||| || | ||||| Sbjct 166021 CACTAAATGAAGGGTCGACTCCTTTTGAATATTGTAATCAGCCAGGGTGCGGCCATCCTC 165962 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| || | | || | | |||||| || || | || || ||||| Sbjct 165961 AAGTTGCTTTCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTG 165902 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | ||||| |||| | ||| ||| | ||||||||||| Sbjct 165901 GATCTTTGCCTTCACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAGGTTATGGTTTT 165842 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || ||||| || ||||| Sbjct 165841 CCCAGTGAGAGTCTTAACAAAGATTTGCAT 165812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419670585459872