Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq25876 122 5e-23 seq7522 116 2e-21 seq398 114 7e-21 seq39476 113 2e-20 seq157 109 3e-19 seq5 109 3e-19 seq222518 107 1e-18 seq26865 105 3e-18 seq1233 105 3e-18 seq3467 104 1e-17 seq938 104 1e-17 seq288009 102 4e-17 seq2827 102 4e-17 seq1041 102 4e-17 seq57 102 4e-17 seq148591 98.7 5e-16 seq2499 98.7 5e-16 seq39253 96.9 2e-15 seq17868 95.1 6e-15 seq2417 95.1 6e-15 seq63275 93.3 2e-14 seq8644 93.3 2e-14 seq4376 93.3 2e-14 seq274 93.3 2e-14 seq2375 89.7 3e-13 seq794 86.0 3e-12 seq917 84.2 1e-11 >seq25876 Length=3330 Score = 122 bits (134), Expect = 5e-23 Identities = 91/105 (87%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| ||| ||| ||||||||| |||| |||||||||| | | |||||||| ||||||| Sbjct 352 AAAGATA-AATAAATAAAAAAATTCAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTT 294 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||||| |||| |||||||||| |||||| Sbjct 293 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCGT 249 >seq7522 Length=20957 Score = 116 bits (128), Expect = 2e-21 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| |||| |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 20619 AAAAAAAATTCAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 20678 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||| |||||||||| |||||| Sbjct 20679 GACGCTCTAACCAGCTGAGCTAATAGGCCGT 20709 >seq398 Length=130292 Score = 114 bits (126), Expect = 7e-21 Identities = 84/98 (86%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 78884 AAAAACAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 78943 Query 11506 TCTRACCAACTGAGCTAATGGGCCGT---CGACGATTG 11540 ||| |||| ||||||||||||||| | |||||||| Sbjct 78944 TCTAACCAGCTGAGCTAATGGGCCATTTCAGACGATTG 78981 >seq39476 Length=1747 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||| || | ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 293 AATAATAATTAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 234 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 233 GACGCTCTAACCAACTGAGCTAATAGGCC 205 >seq157 Length=173231 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| ||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 19318 TAAAAAATGGTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 19377 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 19378 CGCTCTAACCAGCTGAGCTAATAGGCC 19404 >seq5 Length=436598 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 238749 AAAAAAT--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 238692 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 238691 GCTCTAACCAGCTGAGCTAATAGGCC 238666 >seq222518 Length=239 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 178 AAAAAT--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 121 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 120 CTCTAACCAGCTGAGCTAATAGGCC 96 >seq26865 Length=3107 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11447 AAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||||| |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 364 AAATAAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 423 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 424 TCTAACCAGCTGAGCTAATAGGCC 447 >seq1233 Length=79706 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11447 AAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||||| |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 44157 AAATAAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 44216 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 44217 TCTAACCAGCTGAGCTAATAGGCC 44240 >seq3467 Length=41244 Score = 104 bits (114), Expect = 1e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| ||||| | ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 20251 TAATGAAAAAAGTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 20310 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| |||| |||||||||| ||||| Sbjct 20311 CGACGCTCTAACCAGCTGAGCTAATAGGCCG 20341 >seq938 Length=91342 Score = 104 bits (114), Expect = 1e-17 Identities = 79/93 (85%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| |||||| ||| ||||||||| | | |||||||| |||||||||||||||| Sbjct 33746 AATTATGAAAAAAACAA-TTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTA 33804 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||| |||||||||| |||| Sbjct 33805 GCACGACGCTCTAACCAGCTGAGCTAATAGGCC 33837 >seq288009 Length=206 Score = 102 bits (112), Expect = 4e-17 Identities = 86/105 (82%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 11426 GGGAAATATAGA-ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 |||||||||| | || ||| ||||| | |||||||| | | |||||||| |||| Sbjct 26 GGGAAATATATATATAAATTAAAAA----AATGGCCCATACAGGTCTCGAACCTGTGACC 81 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 82 TTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 126 >seq2827 Length=48315 Score = 102 bits (112), Expect = 4e-17 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 43885 AAAAATAAAAATTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGA 43826 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| ||||||||||||||| Sbjct 43825 CGCTCTAACCAGCTGAGCTAATGGGCC 43799 >seq1041 Length=87369 Score = 102 bits (112), Expect = 4e-17 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||||| || | |||||||||| | | |||||||| |||||||||||||||| Sbjct 64953 AATTAATATTTAAAAACATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTA 65012 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||| |||| |||||||||| |||||| Sbjct 65013 GCACGACGCTCTAACCAGCTGAGCTAATAGGCCGT 65047 >seq57 Length=239145 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 25823 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 25882 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 25883 CAGCTGAGCTAATAGGCC 25900 >seq148591 Length=324 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 47 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 106 Query 11512 CAACTGAGCTAATGGGCC 11529 || ||||||||||||||| Sbjct 107 CAGCTGAGCTAATGGGCC 124 >seq2499 Length=52365 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 19951 AATTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 19892 Query 11512 CAACTGAGCTAATGGGCC 11529 || ||||||||||||||| Sbjct 19891 CAGCTGAGCTAATGGGCC 19874 >seq39253 Length=1757 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 11437 AATTA--ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| |||||||| | ||||||||| | | |||||||| |||||||||||||| Sbjct 641 AATTATGATAAAAAAC--ATTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTAT 698 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| |||||||||| |||| Sbjct 699 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 733 >seq17868 Length=6662 Score = 95.1 bits (104), Expect = 6e-15 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || |||||| |||| |||||||| | | |||||||| ||||||||||||||||| Sbjct 1976 AACAAAAAACAAAATGAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAG 2035 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||| |||||||||| |||| Sbjct 2036 CACGACGCTCTAACCAGCTGAGCTAATAGGCC 2067 >seq2417 Length=53449 Score = 95.1 bits (104), Expect = 6e-15 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||| || | |||||||| | | |||||||| |||||||||||||||||| Sbjct 50820 TTAAAAAAATATTTGAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGC 50761 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 50760 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 50730 >seq63275 Length=985 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 332 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 273 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 272 CAGCTGAGCTAATAGGCC 255 >seq8644 Length=18120 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 61 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 120 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 121 CAGCTGAGCTAATAGGCC 138 >seq4376 Length=34293 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 12283 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 12224 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 12223 CAGCTGAGCTAATAGGCC 12206 >seq274 Length=148504 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 91085 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 91026 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 91025 CAGCTGAGCTAATTGGCC 91008 >seq2375 Length=53969 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| ||||||||||||||||||||||||||| || Sbjct 37815 AAAATGGCCCATACAGGTCTCGAACCTGTAACCTTCGCGTTATTAGCACGACGCTCTAAC 37756 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 37755 CAGCTGAGCTAATAGGCC 37738 >seq794 Length=98529 Score = 86.0 bits (94), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| | || |||| | |||||||||| | | ||||| ||||||| ||||||||| Sbjct 4033 AATTCAAAAGAAAT--ATTTGGCCCATGCAGTTCTTAAACCTGCGACCTTTGCGTTATTA 3976 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||| ||||||||||||||| |||| Sbjct 3975 GCACGACGATCTAACCAACTGAGCTAATAGGCC 3943 >seq917 Length=92174 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/68 (88%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 64215 AATAAAAAATCTA--TGGCCCATGTAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 64272 Query 11501 GACGCTCT 11508 |||||||| Sbjct 64273 GACGCTCT 64280 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260510035334272