Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq3539 134 1e-26 seq14767 107 2e-18 seq382 102 7e-17 seq13688 96.9 3e-15 seq464 93.3 4e-14 seq5329 86.0 5e-12 seq277752 84.2 2e-11 seq10513 84.2 2e-11 >seq3539 Length=40568 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||||||||| || ||||| || || || || ||||| || |||| ||| Sbjct 16656 AACATGCAAATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGAGGGT 16715 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | ||| || | | |||| || ||| || || |||||||||||| |||| ||| Sbjct 16716 AACGATACCATCG-ACAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGA 16774 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| || ||||| || | ||| ||||| ||||| ||||||| || ||| | || ||||| Sbjct 16775 TCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGATTA 16834 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||||||| ||||| ||| | || |||||||||| || | ||||||| Sbjct 16835 TAACATTCAAAAGGAGTCCACTCTTCACCTGGTGTTGAGGCTGAGGGGAGGAA 16887 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 115381 TAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGA 115440 |||||||||| |||| |||||| || ||||| |||| ||| ||||| ||||| ||||| Sbjct 20132 TAAAGAAGGCATCCCTCCTGATCAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGA 20191 Query 115441 TGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 || || ||| | || ||| ||||||||| ||| ||||| ||| | || | | ||||| Sbjct 20192 TGGCAGAACTCTTGCGGATGATAACATTC-AAAGGAGTCGACTCTTCACCTAGCATTGAG 20250 Query 115501 ATTGCGAGGAGGAA 115514 || | ||||||| Sbjct 20251 GCTGAGGGGAGGAA 20264 >seq14767 Length=9121 Score = 107 bits (118), Expect = 2e-18 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||||||||| | ||||| || || | || ||||| || | || ||| | Sbjct 1239 AACATGCAAATTTTCATGAAAACACTAACTAGGAAGACCATCACTCTTGAGGTTGAGGGC 1180 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || || || | | |||| || ||| || || | ||||| |||| |||| ||| Sbjct 1179 AGTGATACCATCG-ACAATGTCAAAGCCAAGATCCAGGCTAAAGTAGGCATCCCTCCTGA 1121 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| || ||||| |||| ||| ||||| ||||| ||||||| |||||| | || ||||| Sbjct 1120 TCAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAAAACTCTTGCGGATTA 1061 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||| ||| ||||| ||| | | | || |||||| || | ||||||| Sbjct 1060 TAACATTC-AAAGGAGTCGACTCTTCCCCTAGTATTGAGACTGAGGGGAGGAA 1009 >seq382 Length=131996 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| ||||||||| ||||| |||| ||| || || ||||| ||| Sbjct 52752 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 52811 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| | || |||||||| || ||||||||||| ||| | || | || ||| Sbjct 52812 GATGGTCGAACTCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTTTTG 52871 Query 115499 AGATTGCGAGGAGGAA 115514 || ||| | ||||||| Sbjct 52872 AGGTTGAGGGGAGGAA 52887 >seq13688 Length=10182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| ||||||||| ||| | |||| ||| || || ||||| ||| Sbjct 6830 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 6889 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 || | || ||| | || ||||||||||| ||||| ||||| ||| | || |||| ||| Sbjct 6890 GAAGGCAGAACTCTTGCAGATTATAACATCCAAAAGGAGTCAACTCTTCACCTGGTTTTG 6949 Query 115499 AGATTGCGAGGAGGAA 115514 | || | ||||||| Sbjct 6950 CGGCTGAGGGGAGGAA 6965 >seq464 Length=123775 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| |||||| || ||| | |||| ||| || || ||||| ||| Sbjct 13860 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 13801 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | | | | || ||||||||||| ||||| ||||| ||| | || |||| ||| Sbjct 13800 GATGGTAGATCTCTTGCAGATTATAACATCCAAAAGGAGTCAACTCTTCACCTGGTTTTG 13741 Query 115499 AGATTGCGAGGAGGAA 115514 || || | ||||||| Sbjct 13740 AGGCTGAGGGGAGGAA 13725 >seq5329 Length=29078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||||||||| | ||||| || || | || |||| || | || ||| | Sbjct 25946 AACATGCAAATTTTCATGAAAACACTAACTAGGAAGACCACCACTCTTGAGGTTGAGGGC 25887 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || || || | ||||| || ||| || || | |||||||||| |||| ||| Sbjct 25886 AGTGATAC-CATCGACAATGTCAAAGCCAAGATCCAGGCTAAAGAAGGCATCCCTCCTGA 25828 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| | ||||| |||| ||| ||||| ||||| ||||||| || ||| | || ||||| Sbjct 25827 TCA--ACAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGATTA 25770 Query 115462 TAACATTCAAAAAGAGTCTACT 115483 |||||||| ||| ||||| ||| Sbjct 25769 TAACATTC-AAAGGAGTCGACT 25749 >seq277752 Length=210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| ||||||||| ||| | |||| ||| || || ||||| ||| Sbjct 99 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 40 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAG 115477 |||| || ||| | || ||||||||||| ||||| ||| Sbjct 39 GATGGCAGAACTCTTGCAGATTATAACATCCAAAAGGAG 1 >seq10513 Length=14544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||||||||| ||| | |||| ||| | || ||||| ||||||| || ||| | || || Sbjct 3520 TGATCAGCAGAGATTGATTTTTGCCTGTAAGCAATTGGAAGATGGCAGAACTCTTGCAGA 3579 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||| ||||| ||||| ||| | || || | ||||| || | ||||||| Sbjct 3580 TTATAACATCCAAAATGAGTCAACTCTTCACCTGTTTTTGAGGCTGAGGGGAGGAA 3635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423748028496640