Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq36124 131 1e-25 seq2173 127 1e-24 seq839 123 2e-23 seq3539 105 4e-18 seq171 100 2e-16 seq135 96.9 2e-15 seq13557 93.3 3e-14 seq35007 89.7 3e-13 seq459 87.8 1e-12 seq181 86.0 4e-12 >seq36124 Length=1942 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 626 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 567 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 566 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 532 >seq2173 Length=56971 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| |||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 11003 AAGCCCGTTCTCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 11062 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 11063 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 11097 >seq839 Length=95879 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 3817 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 3876 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||||||||||||||||||||||| Sbjct 3877 TAATCCATTCATGCGCGTCACTAATTAGATGAC 3909 >seq3539 Length=40568 Score = 105 bits (116), Expect = 4e-18 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| | |||||||| ||||||||| |||||||||||| || ||||| | | Sbjct 16885 CCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCG-C 16827 Query 38151 AAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 || | |||| || || ||||| || || ||||| || || | |||||||| | Sbjct 16826 AAGA---GTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGG 16770 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 |||| ||||||||| ||| || || || ||||| | || ||||| || || Sbjct 16769 AGGGATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGTTACCCTC 16710 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || | || || || || || || | ||||||||||| || |||||||| Sbjct 16709 AACCTCGAGAGTGATGGTCTTCCCAGTTAGAGTTTTCACGAAAATTTGCATGTT 16656 >seq171 Length=169594 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||||||||| |||||||| || || || || |||||||| | Sbjct 166266 CCACCACGGAGACGCAACACCAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAATCCGCA 166207 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || ||||| ||||| || ||||| || || | || || || | || Sbjct 166206 AGAGTGCGACCATCCTCTAACTGTTTCCCTGCAAAGATGAGCCTCTGCTGGTCTGGAGGA 166147 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || || ||| ||| ||| ||| ||||| | | |||||| ||||||||| Sbjct 166146 ATGCCCTCCTTATCCTGAATCTTTGCCTTGACATTATCTATTGTATCTGAACTTTCAACC 166087 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || || | |||||| || || || |||||| Sbjct 166086 TCCAAGGTGATGGTCTTTCCGGTGAGGGTTTTGACAAAGATTTGCATG 166039 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||| |||||||| || ||||||||||||||||||||||| | Sbjct 166038 CCACCACGAAGACGGAGCACTAAATGAAGGGTCGACTCCTTTTGAATATTGTAATCAGCC 165979 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||| ||||| ||||| || || | || || || | ||| Sbjct 165978 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGG 165919 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| || ||| ||||||||| | | || || ||| ||||| Sbjct 165918 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCGGAACTCTCAACC 165859 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || ||||| || || | || || || || || |||||| Sbjct 165858 TCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTAACAAAGATTTGCATG 165811 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| ||||||||| ||||||||||||||||| |||| | ||| | || || Sbjct 165793 CACCAGGTGAAGAGTGGATTCCTTTTGAATATTGTAGTCAGCGAGGGTGCGTCCATCCTC 165734 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || || ||||| || || | ||| || || | ||||| |||||| ||||| Sbjct 165733 GAGCTGCTTGCCAGCAAAAATCAGCCTTTGCTGGTCCGGGGGGATGCCTTCCTTGTCTTG 165674 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||||| || ||||| | | || || |||||||| || | || || || || Sbjct 165673 GATTTTGGCTTTGACATTATCTATGGTGTCAGAGCTTTCAACCTCAAGGGTTATGGTCTT 165614 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| ||||| |||||||| Sbjct 165613 GCCAGTGAGAGTTTTGACGAAGATCTGCAT 165584 >seq135 Length=179161 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 38082 CAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 ||| ||| |||||| | | ||| | || | || || || |||||||||||| ||| Sbjct 30234 CAAACATCACCACCGCGGAGACGGAGGACAAGGTGGAGTGTAGACTCCTTTTGAATGTTG 30293 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 ||||||| |||| || | || || ||||| ||||| ||||| || | | || ||| Sbjct 30294 TAATCAGCCAAAGTGCGGCCATCCTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGA 30353 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | |||| || || ||||| ||| || || ||||| | | |||||| Sbjct 30354 TCAGGTGGGATCCCCTCCTTGTCTTGAATCTTCGCTTTGACATTGTCAATAGTATCGGAG 30413 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || | || || ||||| ||||||| || ||||| || |||||||| Sbjct 30414 CTCTCAACCTCCAGAGTGATCGTTTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 30469 >seq13557 Length=10351 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 38082 CAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 ||| ||| |||||| | | ||| | || | || || || |||||||||||| ||| Sbjct 8534 CAAACATCACCACCGCGGAGACGGAGTACAAGGTGGAGGGTAGACTCCTTTTGAATGTTG 8475 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 ||||||| |||| || | || || | ||| ||||| ||||| || | | || || Sbjct 8474 TAATCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGG 8415 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | |||| || || ||||| ||| ||| || ||||| | | |||||| Sbjct 8414 TCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATAGTATCCGAG 8355 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || | || || ||||| ||||||| || ||||| || |||||||| Sbjct 8354 CTCTCAACCTCCAGAGTGATCGTTTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 8299 >seq35007 Length=2034 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| ||||| || ||||||| |||| || | || || | ||| ||||||||||| Sbjct 1857 CTCCTTCTGAATGTTATAATCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCGGCAAA 1798 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || | | || || || | |||| ||||| ||||| ||| ||| || ||||| Sbjct 1797 GATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTTTGCTTTGACATT 1738 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | ||||| || ||||| || || || || || || || |||||||| || || Sbjct 1737 GTCAATGGTATCGGAGCTCTCAACCTCCAAAGTGATTGTCTTGCCTGTCAAGGTCTTGAC 1678 Query 38306 GAATATCTGCAT 38317 ||||||||||| Sbjct 1677 AAATATCTGCAT 1666 >seq459 Length=124062 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || || | ||||| ||||| ||| ||||||||| |||||||||| Sbjct 120588 CATT-CCACCACGCAGCCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATATTGTAAT 120530 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | || | || |||| ||||| || ||||| || || | || ||||| | Sbjct 120529 CTGCAAGGGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGATCTG 120470 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| || || |||||| || ||| ||| ||||| | || ||||| || | Sbjct 120469 GGGGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAGCTCT 120410 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || || || || || || || || | || || || || ||||||||| Sbjct 120409 CGACCTCCAAGGTGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCATG 120357 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| ||||| |||||| ||||| ||||| || | | Sbjct 120812 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCTGCC 120753 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || ||||| ||||| || || | || || || | ||| Sbjct 120752 AGTGTCCTACCATCTTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 120693 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || ||| ||| ||||| | | ||||| ||||| || Sbjct 120692 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTATCAGAGCTTTCCACC 120633 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || | ||| ||||| || || ||||| Sbjct 120632 TCCAAGGTGATTGTCTTCCCAGTAAGGGTCTTCACAAAGATTTGCAT 120586 >seq181 Length=165841 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| |||||||||| |||||| || ||||||||||| | || | | | || || Sbjct 158676 ACCAGATGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCCAGAGTCCTGCCATCCTCC 158735 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || || ||||||||||| || | | || ||||| | ||| | || || || ||| | Sbjct 158736 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATCCCCTCCTTATCCTGA 158795 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | || || || || || || || | || || || || Sbjct 158796 ATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTC 158855 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| || || ||||| ||||||||| Sbjct 158856 CCCGTCAAAGTCTTGACGAAGATCTGCATG 158885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333690414465632