Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6231 109 7e-19 seq193897 89.7 6e-13 >seq6231 Length=25150 Score = 109 bits (120), Expect = 7e-19 Identities = 249/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||||||||||| || || |||| || || ||||| || || || || Sbjct 18538 CACGCGAAGTCGCAGTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 18479 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| | || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 18478 CCGGGCATCAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 18420 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCAT 32835 || || || || |||||||| | | | ||| | ||| ||| || ||| Sbjct 18419 GATCCCCTCCACGCAGGCAAAGGCCACGATGCGCTC-CGCGAACGTCTCGGAGCCGTC-- 18363 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | ||||| | ||||||||| || || || || || || | || Sbjct 18362 -GATCCAGCGCAGGGCCCACTGGGCCTTCTTGGCGACGCAGGGGATGGTGTCGACGGCCC 18304 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 |||||| | | || || | ||||||| ||| || || | | ||| || |||| Sbjct 18303 GGAAGAGACGGCTCTTCTCGTCCGAGTCTTTAATATAGGTCTCGAGGAGAAGGCTGTACA 18244 Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAA 33015 | || ||||| ||||| ||||| || || || || ||||||||| | ||||| | | Sbjct 18243 TCTCGGAATGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGA 18184 Query 33016 TCTGTACTTC 33025 |||||| || Sbjct 18183 CCTGTACCTC 18174 >seq193897 Length=263 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 || |||| ||| |||||||| | || | ||| || | |||| |||||| | ||| || Sbjct 113 CCTTTTGCCTCCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGTAGCATCGG 172 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 ||| || ||||||||||| ||||| || || ||||| || ||| |||||||||| || Sbjct 173 AATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTT 232 Query 63337 ACTAATTGATAGACCTATTCCCCCTGC 63363 || || | ||| |||||||| || Sbjct 233 GTGAACAGAGACACCAATTCCCCCAGC 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631193530611200