Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6231 109 6e-19 seq25227 95.1 1e-14 seq19056 93.3 5e-14 seq1657 89.7 6e-13 seq7320 87.8 2e-12 seq2780 87.8 2e-12 seq262599 86.0 7e-12 seq14981 86.0 7e-12 seq1213 86.0 7e-12 seq1342 84.2 2e-11 seq159244 82.4 8e-11 seq9531 82.4 8e-11 seq417 82.4 8e-11 seq131 82.4 8e-11 >seq6231 Length=25150 Score = 109 bits (120), Expect = 6e-19 Identities = 503/787 (64%), Gaps = 11/787 (1%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACG 92982 || ||||| || || || |||||||| ||||| ||||| |||||||| | ||| || Sbjct 18706 CTGTCAGCCACGAACTCGATGTACTGGCTCATCAGATCACCGTTCATTCCAACTAAGGCG 18647 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || |||| |||||| || ||| ||| |||| || |||| || || | |||| Sbjct 18646 CAC-GGTAACGCGTCGCACACGAACTCTCTCTCTATCTCAACCGCGTCGCGGACGATTGA 18588 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT-GTACATTAAGCACGCAAAGT 93101 | || | || | |||| || | || | ||| | | |||||| |||| Sbjct 18587 CTTCACGCG-CTCCTCGGTGAGCTTCATCCGGAGGAGCGAGTAGAGCAGGCACGCGAAGT 18529 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 || |||| ||||| ||||| || |||||||| || ||| || | ||| || | || Sbjct 18528 CGCAGTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCGGGCATCA 18469 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCC 93220 || || || |||||||||||||| | ||| || || || || || || || || ||| Sbjct 18468 ACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAAGATCCCCTCC 18410 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||| ||||| ||||| || || || || || | |||| | | |||||| Sbjct 18409 ACGCAGGCAAAGGCCACGATGCGCTCCGCGAACGTCTCGGA---GCCGTCGATCCAGCGC 18353 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG-GTA 93339 | ||||| | ||| || || | || || | || |||| || || || Sbjct 18352 AGGGCCCACTGGGCCTTCTTGGCGACGCAGGGGATGGTGTCGACGGCCCGGAAGAGACGG 18293 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 ||| ||||||||| ||| || || || |||| | || ||||| || ||||| Sbjct 18292 CTCT-TCTCGTCCGAGTCTTTAATATAGGTCTCGAGGAGAAGGCTGTACATCTCGGAATG 18234 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || ||||| || || || ||||| |||||||| | || |||| || ||| || || Sbjct 18233 GATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGTACCTC 18174 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 | || | | ||||||| || || || || ||||| || || || || || Sbjct 18173 CTTCATGAAGCGGCCGGCGAGATTCTCGAGAACGATGCCGTCGGAGGCGGCGAAGAAGGC 18114 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 | | || | || || || ||||| | | || | ||||| | | | || Sbjct 18113 GAGGACGTGAGTGATGAAGTGCTTCTCCCCCGGGGTTAGGGTCTCCCAGTGGCGCTGGTC 18054 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATC 93639 | || ||||| || ||| | ||||| ||||| || || || || |||||||| || Sbjct 18053 CTGGTCGAGGTCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATTTC 17994 Query 93640 CCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAA 93699 ||| || || | || ||||| || || ||| || || | ||||| | | || | Sbjct 17993 CCAGATCTCCGGGTACTGAATCGGGAACATGCAGAACCGGTCCGGGTTGGCCATCAGCAG 17934 Query 93700 CGGCTCT 93706 ||||||| Sbjct 17933 CGGCTCT 17927 >seq25227 Length=3494 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 1204 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 1145 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| |||||| | |||| Sbjct 1144 GCGTGGGTTCAAATCCCACTTCTGACATACTATT 1111 >seq19056 Length=5946 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 867 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 926 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||||| || ||||| |||||| | ||| Sbjct 927 GCGTGGGTTCAAATCCCACTTCTGACATACTAT 959 >seq1657 Length=67380 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 17509 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 17566 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| |||| |||||| Sbjct 17567 GGGTTCAAATCCCACAGCTGTCAAACAATTATT 17599 >seq7320 Length=21593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/99 (81%), Gaps = 8/99 (8%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 17485 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAG 17428 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||| || ||||| ||||| |||||| ||| Sbjct 17427 GGCGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTTG 17391 >seq2780 Length=48850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 21123 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 21180 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 21181 GGGCGTGGGTTCAAATCCCACTTCTGACAATTT 21213 >seq262599 Length=216 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 127 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 70 Query 126325 GGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||| || |||||| ||| |||| ||| Sbjct 69 GGGTTCAAATCCCACAGCTGTCAAAATAT 41 >seq14981 Length=8908 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/99 (80%), Gaps = 6/99 (6%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2449 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2506 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||| || |||||| ||| || ||| ||| ||||||| Sbjct 2507 TTCAAATCCCACAGCTGTCA----ATTTTTGAAATTTTT 2541 >seq1213 Length=80185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/102 (79%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 57060 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 57003 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| || ||| ||| ||||||| || Sbjct 57002 TTCAAATCCCACAGCTGTCA----ATTTTTGAAATTTTTTTT 56965 >seq1342 Length=76112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| |||| ||||||||||| |||||||| | ||| |||||| | || || | || Sbjct 53255 AGTCAGGATGGCGGAGTGGTCTAACGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 53196 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||||| || || || Sbjct 53195 GTGGGTTCAAATCCCACTTCTGACAATTTTTTTTT 53161 >seq159244 Length=305 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| |||| ||||||||||| |||||||| | ||| |||||| | || || | || Sbjct 34 AGTCAGGATGGCGGAGTGGTCTAACGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 93 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||||| || || Sbjct 94 GTGGGTTCAAATCCCACTTCTGACAATTTTTT 125 >seq9531 Length=16263 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 5449 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 5392 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 5391 TTCAAATCCCACAGCTGTCAATTT 5368 >seq417 Length=128495 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 71452 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 71509 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 71510 GCGTGGGTTCAAATCCCACTTCTGACA 71536 >seq131 Length=180959 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| |||| ||||||||||| |||||||| | ||| |||||| | || || | ||| Sbjct 125505 GTCAGGATGGCGGAGTGGTCTAACGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 125564 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || |||||| |||||| Sbjct 125565 TGGGTTCAAATCCCACATCTGACA 125588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554717776897280