Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1675 102 7e-17 seq171 89.7 4e-13 seq459 82.4 6e-11 >seq1675 Length=66877 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| ||||| ||||| || |||| ||| | | Sbjct 7210 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCTCC 7269 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 ||| | ||| | | || ||| || ||| || || || || | |||| || |||| Sbjct 7270 GATACCATTGACAATGTCAAAGCTAAGATTCAGGATAAGGAGGGTAT-CCCGCCGGATCA 7328 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||||| || | ||| || || |||||||| ||| | || ||||||||||||| Sbjct 7329 GCAAAGGCTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGTACATTGGCCGATTATAA 7388 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || ||||| ||||| || || | || | ||||| |||||||| Sbjct 7389 TATCCAGAAAGAGTCTACCCTGCACCTTGTTCTTCGTCTCCGCGGTGG 7436 >seq171 Length=169594 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | |||||||||||||| || ||||| |||| | Sbjct 166268 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTCTGGAAGTGGAAAGCTCT 166327 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| |||||||| || ||||| || || Sbjct 166328 GACACGATTGATAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCCCCAGACCAG 166387 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | |||| ||| || || || | || ||| | || | ||||| |||||| Sbjct 166388 CAGAGATTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTCGCCGACTATAAT 166447 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || || || ||| | |||||||| ||||| Sbjct 166448 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGTGG 166494 >seq459 Length=124062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || | || || || || || ||| |||| |||| | Sbjct 120585 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACCTTGGAGGTGGAAAGCTC 120644 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | | || || ||| || |||||||||||| ||||| || || Sbjct 120645 TGATACAATTGACAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 120704 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || || || | |||||| || || |||| || || || Sbjct 120705 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTACAA 120764 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || ||||| ||| | ||||| || ||||| Sbjct 120765 CATTCAGAAGGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 120812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421452673542400