Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1210 113 9e-20 seq2671 104 5e-17 seq9767 98.7 2e-15 seq23035 89.7 1e-12 seq9012 89.7 1e-12 seq5662 89.7 1e-12 seq273341 87.8 4e-12 seq205964 87.8 4e-12 seq8696 87.8 4e-12 seq6729 87.8 4e-12 seq6501 87.8 4e-12 seq3047 87.8 4e-12 seq2331 87.8 4e-12 seq1775 87.8 4e-12 seq1707 87.8 4e-12 seq1214 87.8 4e-12 seq1025 87.8 4e-12 seq183 87.8 4e-12 seq161 87.8 4e-12 seq61727 86.0 1e-11 seq1445 86.0 1e-11 seq560 86.0 1e-11 seq57642 84.2 4e-11 >seq1210 Length=80362 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| ||||| | |||||| ||| | ||||| || || | | || ||| ||||| Sbjct 44049 TGGTTGATGGGTTGAAGCCAGGTCAGAGAAAGATACTATTCTGCTCTTTTAAGAGGAACT 44108 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | | | ||| || || || ||||||||||||||||| || || ||||| ||||| Sbjct 44109 TTATCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCTGCCTACC 44168 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 | || ||||| || ||||| || | || | || |||||||| || ||||| |||| Sbjct 44169 ACCATGGTGAACAAAGTCTTGCCAGTACTATCATTGGAATGGCACAAGATTATGTAGGCA 44228 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||||||||| || | || | || || ||||| ||||| ||||| Sbjct 44229 GTAACAACATTAATCTCCTTCAACCAAATGGTCAATTTGGGACTCGT 44275 >seq2671 Length=50149 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| ||||| | |||||| || | ||||| || || | | || ||| ||||| Sbjct 25108 TGGTTGATGGATTGAAGCCAGGTCAAAGAAAGATACTGTTCTGCTCTTTTAAGAGGAACT 25167 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | | | ||| || || || ||||||||||||||||| || || ||||| ||||| Sbjct 25168 TTATCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCTGCCTACC 25227 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 | || |||||| | ||||| || | || | || |||||||| || |||||||||| Sbjct 25228 ACCATGGTGAGGAAAGTCTTGCCAGTACTATCATTGGAATGGCACAAGAATATGTGGGCA 25287 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||||||| | || | || | || || ||||| ||||| ||||| Sbjct 25288 GTAACAATGTTAATCTCCTTCAACCAAATGGTCAATTTGGGACTCGT 25334 >seq9767 Length=15813 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| ||||| | |||||| || | ||||| || || | | || ||| ||||| Sbjct 10937 TGGTTGATGGGTTGAAGCCAGGTCAAAGGAAGATACTATTCTGCTCTTTTAAGAGGAACT 10996 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | | ||| || || || ||||||||||||||||| | || ||||| ||||| Sbjct 10997 TTATCAGGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTTTGAGCATTCTGCCTACC 11056 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 | || |||||| ||||| || | || | || |||||||| || |||||||||| Sbjct 11057 ACCATGGTGAGGCAAGTCTTGCCAGTACTATCATTGGAATGGCACAAGATTATGTGGGCA 11116 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||||||||| || | || | || || ||||| ||||| ||||| Sbjct 11117 GTAACAACATTAATCTCCTTCAACCAAATGGTCAATTTGGGACTCGT 11163 >seq23035 Length=4159 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||| Sbjct 3751 GAGAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 3692 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 3691 GAGCCCCAC 3683 >seq9012 Length=17339 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||| Sbjct 15441 GACAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 15500 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 15501 GAGCCCCAC 15509 >seq5662 Length=27482 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||| Sbjct 15225 GACAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 15166 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 15165 GAGCCCCAC 15157 >seq273341 Length=212 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 123 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 64 Query 142563 CCCCAC 142568 |||||| Sbjct 63 CCCCAC 58 >seq205964 Length=252 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 83 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 24 Query 142563 CCCCAC 142568 |||||| Sbjct 23 CCCCAC 18 >seq8696 Length=18005 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8240 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8299 Query 142563 CCCCAC 142568 |||||| Sbjct 8300 CCCCAC 8305 >seq6729 Length=23368 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1341 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1400 Query 142563 CCCCAC 142568 |||||| Sbjct 1401 CCCCAC 1406 >seq6501 Length=24116 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8762 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8821 Query 142563 CCCCAC 142568 |||||| Sbjct 8822 CCCCAC 8827 >seq3047 Length=45570 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 44577 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 44636 Query 142563 CCCCAC 142568 |||||| Sbjct 44637 CCCCAC 44642 >seq2331 Length=54596 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3288 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3347 Query 142563 CCCCAC 142568 |||||| Sbjct 3348 CCCCAC 3353 >seq1775 Length=64698 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 18438 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18497 Query 142563 CCCCAC 142568 |||||| Sbjct 18498 CCCCAC 18503 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 18770 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18829 Query 142563 CCCCAC 142568 |||||| Sbjct 18830 CCCCAC 18835 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 19126 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 19185 Query 142563 CCCCAC 142568 |||||| Sbjct 19186 CCCCAC 19191 >seq1707 Length=66116 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5711 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5770 Query 142563 CCCCAC 142568 |||||| Sbjct 5771 CCCCAC 5776 >seq1214 Length=80162 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 77844 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 77785 Query 142563 CCCCAC 142568 |||||| Sbjct 77784 CCCCAC 77779 >seq1025 Length=88092 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 68432 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 68373 Query 142563 CCCCAC 142568 |||||| Sbjct 68372 CCCCAC 68367 >seq183 Length=165544 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 123418 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 123477 Query 142563 CCCCAC 142568 |||||| Sbjct 123478 CCCCAC 123483 >seq161 Length=171658 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 93816 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 93875 Query 142563 CCCCAC 142568 |||||| Sbjct 93876 CCCCAC 93881 >seq61727 Length=1022 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 500 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 441 Query 142564 CCCAC 142568 ||||| Sbjct 440 CCCAC 436 >seq1445 Length=72904 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 11056 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11115 Query 142564 CCCAC 142568 ||||| Sbjct 11116 CCCAC 11120 >seq560 Length=113671 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 15507 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15448 Query 142564 CCCAC 142568 ||||| Sbjct 15447 CCCAC 15443 >seq57642 Length=1123 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||| ||||||||||| Sbjct 888 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTTGTGGGTTCGAG 829 Query 142563 CCCCAC 142568 |||||| Sbjct 828 CCCCAC 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1023782384680352