Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq171 98.7 7e-16 seq3539 89.7 4e-13 seq459 87.8 1e-12 >seq171 Length=169594 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || |||||||| ||| |||| || | Sbjct 165812 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCC 165871 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| || || ||||||||| | || | |||| Sbjct 165872 GACACCATTGACAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 165931 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||||||||| || ||||| || ||| || |||| ||||||||| Sbjct 165932 CAGAGACTTATCTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTGGCTGATTACAAT 165991 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || || |||||| | || | ||| | || || || Sbjct 165992 ATTCAAAAGGAGTCGACCCTTCATTTAGTGCTCCGTCTTCGTGGTGG 166038 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || ||||||||||| || ||||| |||| | | Sbjct 166268 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTCTGGAAGTGGAAAGCTCT 166327 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || |||||| || ||||||||| | || | |||| Sbjct 166328 GACACGATTGATAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCCCCAGACCAG 166387 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || ||||| || || || || || ||| || || | ||||| || ||| Sbjct 166388 CAGAGATTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTCGCCGACTATAAT 166447 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || ||||| || |||| | ||| | || || || Sbjct 166448 ATTCAGAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGTGG 166494 >seq3539 Length=40568 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| || | ||| | ||||||||||| |||||||||||||| ||| | ||| Sbjct 16752 GATAAAGAAGGCATCCCTCCTGATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAA 16811 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| | |||| | || ||||| || ||||| ||||| || |||||||| |||| || Sbjct 16812 GATGGCAGAACTCTTGCGGATTATAACATTCAAAAGGAGTCCACTCTTCACCTGGTGTT 16870 >seq459 Length=124062 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || | || || || || || ||| |||| |||| | | Sbjct 120585 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACCTTGGAGGTGGAAAGCTC 120644 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| ||| || || ||||| || | || | |||| Sbjct 120645 TGATACAATTGACAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 120704 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || |||||||| || || || || |||||| | || |||| || ||||| Sbjct 120705 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTACAA 120764 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || ||||| ||| |||| | ||| |||| || || Sbjct 120765 CATTCAGAAGGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 120812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356781047706688