Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6231 273 4e-68 >seq6231 Length=25150 Score = 273 bits (302), Expect = 4e-68 Identities = 506/736 (69%), Gaps = 10/736 (1%) Strand=Plus/Plus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || ||| ||| |||||| |||||||||||||| || || |||||||||||||| Sbjct 17977 AGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGG 18036 Query 42349 AGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTT 42408 || | ||||| | | ||||| | | ||||||| | || | | || ||| | Sbjct 18037 AGGTCGACCTCGACCAGGACCAGCGCCACTGGGAGACCCTAACCCCGGGGGAGAAGCACT 18096 Query 42409 TCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGG 42468 || ||| || | || ||||||||||||||||| |||||||| || ||||| || | Sbjct 18097 TCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTCGAGAATCTCG 18156 Query 42469 CCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGA 42528 || | | |||||||| ||||| ||| || |||||||| ||||||||||||||||| Sbjct 18157 CCGGCCGCTTCATGAAGGAGGTACAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAGA 18216 Query 42529 TAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGG 42588 | || || |||||| | || || ||| ||||| | || ||| | || || || | Sbjct 18217 TCGCGATTGAGAACATCCATTCCGAGATGTACAGCCTTCTCCTCGAGACCTATATTAAAG 18276 Query 42589 ATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGA 42648 | | | |||| | | | || ||| |||| | || || || |||||| || |||| Sbjct 18277 ACTCGGACGAGAAGAGCCGTCTCTTCCGGGCCGTCGACACCATCCCCTGCGTCGCCAAGA 18336 Query 42649 AGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGG 42708 |||| | ||||| || ||||||||| | |||| ||||||| ||| | | | Sbjct 18337 AGGCCCAGTGGGCCCTGCGCTGGATCGACGGCTCCGA---GACGTTCGCGGAGCGCATCG 18393 Query 42709 TAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGC 42768 | |||||| || ||| ||||| |||||||||||||| |||| | | || || |||| Sbjct 18394 TGGCCTTTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATATTTTGGC 18453 Query 42769 TCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 |||| || | || ||||||||| || |||||||||||||| | ||| | || | Sbjct 18454 TCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATG 18513 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 | || || || | ||||| || ||||| || | |||| | |||| || |||| | Sbjct 18514 AAGGCCTACACTGCGACTTCGCGTGCCTGCTCTACTCG---CTCCTCCGGATGAAGCTCA 18570 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | ||||||| || | | ||| || || || || ||||| |||| |||||| | Sbjct 18571 CCGAGGAGCGCGTGAAGTCAATCGTCCGCGACGCGGTTGAGATAGAGAGAGAGTTCGT-G 18629 Query 42949 CGCAGTCGC-TGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 || | ||| | ||||| || | || || |||||| || || ||| || ||||||| Sbjct 18630 TGC-GACGCGTTACCGTGCGCCTTAGTTGGAATGAACGGTGATCTGATGAGCCAGTACAT 18688 Query 43007 CCAGTACGTCGCCGAC 43022 | ||| ||| || ||| Sbjct 18689 CGAGTTCGTGGCTGAC 18704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940705005022720