Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq135 93.3 3e-14 seq3539 91.5 1e-13 seq30148 87.8 1e-12 seq13688 87.8 1e-12 seq181 84.2 2e-11 >seq135 Length=179161 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| |||||||| || |||||||||||| || ||||| || || ||| | Sbjct 30480 AGCCTGAGCACAAGATGAAGAGTCGACTCCTTCTGAATATTATAATCCGC-AAGAGTC-C 30537 Query 33970 T--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCT 34027 | | || ||||||||||| ||||| || |||| ||||||||||| ||| | || || Sbjct 30538 TGCCATCCTCCAATTGCTTTCCGGCGAAGATCAACCGCTGCTGATCTGGCGGAATGCCCT 30597 Query 34028 CTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACC 34086 | ||||| |||||| ||| | | | |||||| || | || |||| Sbjct 30598 CCTTGTCTTGAATTTTCGCCTTGACATTATCGATCGTATCAG-AGCTCTCCACCTCGAGA 30656 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 30657 GTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 30697 >seq3539 Length=40568 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| || |||||| ||||| ||| |||||| |||||||| ||||| || Sbjct 16885 CCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCGCA 16826 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||||||||||||| ||||| ||||| | ||| ||||| Sbjct 16825 AGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATC 16773 >seq30148 Length=2559 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || |||||||| || || ||| ||||||||| |||||||| || || | | || | Sbjct 184 AGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGG 125 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||| ||||| || |||||||||||||| ||| ||| | || ||| Sbjct 124 C-CGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 66 Query 34029 TTTGTCC 34035 |||||| Sbjct 65 CTTGTCC 59 >seq13688 Length=10182 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||||||||| ||||| ||||| || |||||| || ||||| |||||||| Sbjct 6963 CCTCCCCTCAGCCGCAAAACCAGGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGCA 6904 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || ||||||||||| |||||||| |||| | ||||||||| Sbjct 6903 AGAGTTCTGCCTTCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGCTGATC 6851 >seq181 Length=165841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| ||| ||||||| || || ||| ||||||||| ||||||||||| ||| Sbjct 158886 CCACCCCTCAACCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCC 158945 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | ||| || |||| ||||||||||| ||||| || |||| | |||||| ||| | Sbjct 158946 -AGGGTCCTGC-CGTCCTCCAATTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGG 159003 Query 34019 GCACGCTCTCTTTGTCC 34035 | | | ||| |||||| Sbjct 159004 GAATTCCCTCCTTGTCC 159020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395572546433344