Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq459 104 2e-17 seq3539 102 6e-17 seq171 102 6e-17 seq13557 87.8 1e-12 seq181 86.0 4e-12 seq135 84.2 2e-11 seq707 82.4 5e-11 >seq459 Length=124062 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAAT-CGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||| || || || || || |||||||||| |||| ||| | ||| | ||||| | || Sbjct 121016 TGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT-AGAGTCCTCCCATCTTCAAGCTG 120958 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || ||||| |||| | | ||| ||||| ||||| || |||||||| ||| || Sbjct 120957 CTTACCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTT 120898 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| ||| ||| | || || ||||| | | ||||| || ||||| ||||| || || | Sbjct 120897 TGC-TTTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAG 120839 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || |||||||| ||||| Sbjct 120838 TGAGGGTCTTCACAAAAATCTGCAT 120814 >seq3539 Length=40568 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| ||||| ||||| ||| |||| | ||||| ||||| Sbjct 16861 TGAAGAGTGGACTCCTTTTGAATGTTATAATCCGCAAGAGTTCTGCCATCTTCCAATTGC 16802 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| | |||||| || || || ||||| || || || ||| Sbjct 16801 TTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTG 16742 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || |||||| || || || || | || ||||| || || || Sbjct 16741 GCTTTGACATTGTCGATGGTATCGTTACCCTCAACCTCGAGAGTGATGGTCTTCCCAGTT 16682 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| || ||||||||||| || Sbjct 16681 AGAGTTTTCACGAAAATTTGCATGTT 16656 >seq171 Length=169594 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || ||||| || || ||||| || ||||||||||| Sbjct 166268 TGCCACCACGGAGACGCAACACCAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAATCCG 166209 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || ||||| ||||| || || | || | | ||| ||||| | Sbjct 166208 CAAGAGTGCGACCATCCTCTAACTGTTTCCCTGCAAAGATGAGCCTCTGCTGGTCTGGAG 166149 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| || ||||| || ||| ||||| || ||| | ||||| ||||| | |||| Sbjct 166148 GAATGCCCTCCTTATCCTGAATCTTTGC-CTTGACATTATCTATTGTATCTGAACTTTCA 166090 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| ||||| || || || || ||||| ||||| |||||||| Sbjct 166089 ACCTCCAAGGTGATGGTCTTTCCGGTGAGGGTTTTGACAAAGATTTGCAT 166040 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||| || || || | ||| | || || | || Sbjct 166698 TGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTCCCATCCTCAAGCTGC 166639 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| |||| | | ||| ||||| ||||| || |||||||| ||| ||| Sbjct 166638 TTTCCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTG 166579 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||||||| | || || ||||| | | || || || || |||||||| || || ||| Sbjct 166578 GTTTTTACATTGTCAATCGTATCTGAACTCTCCACCTCCAAAGTAATGGTCTTCCCAGTC 166519 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 |||||||| ||||| || |||||| Sbjct 166518 AGAGTTTTAACAAAGATCTGCATA 166495 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||||||||||||| || || ||||| || |||||||| || | | | || || Sbjct 166020 ACTAAATGAAGGGTCGACTCCTTTTGAATATTGTAATCAGCCAGGGTGCGGCCATCCTCA 165961 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | || | | ||| ||||| ||| || || || ||||| Sbjct 165960 AGTTGCTTTCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGG 165901 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || ||| | || || || ||| | | || || || ||||| |||||||| Sbjct 165900 ATCTTTGC-CTTCACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAGGTTATGGTTTT 165842 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 165841 CCCAGTGAGAGTCTTAACAAAGATTTGCAT 165812 >seq13557 Length=10351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || ||||| ||||||||||| | | | | | || || | ||| Sbjct 8501 TGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATCCTCCAGTTGC 8442 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || || | ||||| | ||| ||||| ||| || || |||||||| ||| ||| Sbjct 8441 TTTCCTGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTT 8382 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| ||| | || |||||||| | || || || | || || ||||| || || Sbjct 8381 GC-TTTGACATTGTCAATAGTATCCGAGCTCTCAACCTCCAGAGTGATCGTTTTCCCCGT 8323 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 |||||| || ||||| || |||||| Sbjct 8322 CAGAGTCTTCACAAAGATCTGCATA 8298 >seq181 Length=165841 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | || | || | ||| || ||| || || || ||||| ||||| ||| Sbjct 136528 CCACCACGAAGCCTGAGCACAAGATGCAGAGTACTCTCCTTCTGAATGTTATAATCCGCT 136587 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | || || ||||| || |||||| |||| | | ||| ||||| ||| Sbjct 136588 -AGAGTCCGGCCATCCTCCAATTGCTTCCCAGCGAATATGAGCCTCTGCTGGTCCGGTGG 136646 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| || |||||||| |||||| || || | || || |||||| | || || Sbjct 136647 AATCCCCTCCTTGTCTTGAATTTTCGCCTTGACGTTGTCAATCGTATCGGAGCTCTCCAC 136706 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || || || ||||||||||| || ||||| ||||||||| Sbjct 136707 CTCCAGAGTGATCGTCTTTCCTGTCAGAGTCTTCACAAAGATTTGCATA 136755 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | || |||| ||| || || | || || || || || || ||||||||| | Sbjct 136756 CCACCCCTCAGCCTTAGAACCAAGTGCAAAGTGGATTCCTTCTGGATATTGTAATCGGCG 136815 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| || || ||| | ||||| | ||| ||||| ||| Sbjct 136816 AGGGTTCTGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 136875 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || ||||| || || | || || || ||| | || || Sbjct 136876 ATTCCTTCCTTATCCTGGATTTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCAACC 136935 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || || || || || |||||||| || || || ||||| Sbjct 136936 TCGAGAGTGATCGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 136982 >seq135 Length=179161 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || ||||| || ||||| ||||||||||| | | | | | || || ||||| Sbjct 30267 TGGAGTGTAGACTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATCCTCCAATTGC 30326 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | ||||| | ||| || || ||| || || |||||||| ||| || Sbjct 30327 TTTCCTGCAAAGATCAACCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCTTGAATCTTC 30386 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || ||||||||| | || || || | || || ||||| || ||| Sbjct 30387 GCTTTGACATTGTCAATAGTATCGGAGCTCTCAACCTCCAGAGTGATCGTTTTCCCCGTC 30446 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||| || |||||| Sbjct 30447 AGAGTCTTCACAAAGATCTGCATA 30470 >seq707 Length=103418 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 |||| || |||||||| ||| | | | ||||||| | || || || ||| | | Sbjct 63102 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAA 63043 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 |||||||||| ||||| ||||| ||||||||||| || ||| || ||| | | Sbjct 63042 TCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 62983 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || || ||||| | || || || | || ||||| || || || || ||||| || | Sbjct 62982 CGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 62923 Query 15167 AAATTTGCATATT 15179 |||| ||||| || Sbjct 62922 AAATCTGCATCTT 62910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356050997311520