Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6231 86.0 8e-12 seq2275 84.2 3e-11 >seq6231 Length=25150 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || || || || ||||| | || ||||||||| |||||| ||||| | || Sbjct 18524 GTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCGGGCATCAACCC 18465 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| || | ||| || ||||| || || || |||||||||||||||||||| || Sbjct 18464 GCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCCTCCACGCA 18405 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAA 127677 || || || | | ||||| || || Sbjct 18404 GGCAAAGGCCACGATGCGCTCCGCGAA 18378 >seq2275 Length=55327 Score = 84.2 bits (92), Expect = 3e-11 Identities = 197/293 (67%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| ||||| | ||||| || || ||||| | || ||||| | | Sbjct 21625 AAACCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCGTCATTTCC--AC 21568 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | ||| | || || || ||||| || |||||||| || || | Sbjct 21567 CTCCCATTCCTGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATGAACACAATGC 21508 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| | |||| || || ||||| | ||| | ||||||| ||| || || || Sbjct 21507 ACGG-CGCTTTTGACTTTGCCTTCTCAAACAAATCCCTCACTCTCGAGGCCCCAACTCCA 21449 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| |||||| || | | || | || || ||| || | | || || Sbjct 21448 ACAAACAGCTCCACGAACTCCGAAGCTGCGCACGAGAAGAACGGCGTGCCAGCCTCGCCG 21389 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAG 13081 |||| ||| || || || |||||||| || || || ||| |||| | ||||| Sbjct 21388 GCGACGGCACGAGCCAGAAGGGTCTTTCCGGTACCGGGTGGCCCCACCAGAAG 21336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611146178891520