Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6231 140 5e-28 >seq6231 Length=25150 Score = 140 bits (154), Expect = 5e-28 Identities = 540/836 (65%), Gaps = 17/836 (2%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT-TCCATGAACCCGAATGGG 159706 ||||||| || || |||||||| |||| | | || | | ||||| | | |||||| Sbjct 18810 TCTTCTCAAAGAAATTGGTCTTCCCCTGAA-GACTAATCAGCTCCATCCAATCAAATGGG 18752 Query 159707 TTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 |||| | | | ||| |||| |||| | || ||| || |||||| ||||| || Sbjct 18751 TTCTGCGCATCGTAGATCTTCCCGTATCCCAACGCACCCACCAGCCTGTCAGCCACGAAC 18692 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA-GCCTAACGGGGAGCGCTTC 159825 |||||||| | |||| | |||| ||| || || | | | | |||| | ||| || Sbjct 18691 TCGATGTACTGGCTCATCAGATCACCGTTCATTCCAACTAAGGCGCACGGTAA-CGCGTC 18633 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| ||||| |||| ||||| ||||| ||| || || | || || || | Sbjct 18632 GCACACGAACTCTCTCTCTATCTCAACCGCGTCGCGGACGATTGACTTCACGCGCTCCTC 18573 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 |||| || | || | | || |||||||| ||||||||||| || || Sbjct 18572 GGTGAGCTT---CATCCGGAGGAGCGAGTAGAGCAGGCACGCGAAGTCGCAGTGTAGGCC 18516 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 || || || ||||| |||||||| || | | | || || ||||| | ||| ||| ||| Sbjct 18515 TTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCGGGCATCAACCCGCGCTTTTT 18456 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACG 160064 ||||||||| || | |||| |||| || | | || ||||||||||||||| ||||| | Sbjct 18455 GAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAAGATCCCCTCCACGCAGGCAAAGG 18397 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 |||||| | ||| | | | | | || | | | | |||| | |||||| | | Sbjct 18396 CCACGATGCGCTCCGCGA---ACGTCTCGGAGCCGTCGATCCAGCGCAGGGCCCACTGGG 18340 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 ||||||| |||| ||| || ||| |||||||| || | | | || ||| | | Sbjct 18339 CCTTCTTGGCGACGCAGGGGATGGTGTCGACGGCCCGGAAGAGACGGCTCTTCTCGTCCG 18280 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 || || || || | | || |||||| || | || | || || || | Sbjct 18279 AGTCTTTAATATAGGTCTCGAGGAGAAGGCTGTACATCTCGGAATGGATGTTCTCAATCG 18220 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCCTGTGTGAACCTT 160303 | ||||| ||| |||||| ||||||| ||| ||| ||||||| |||| | Sbjct 18219 CGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGA-CCTGTACCTCCTTCATGAAGCGG 18161 Query 160304 TGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAG 160363 | ||||| | ||| | ||||||| ||| || ||||| || | ||||||| | Sbjct 18160 CCGGCGAGATTCTCGAGAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTG 18101 Query 160364 ATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAA 160423 ||||| || |||| | | | || || |||||||| | ||| ||| | | Sbjct 18100 ATGAAGTGCTTCTCCCCCGGGGTTAGGGTC---TCCCAGTGGCGCTGGTCCTGGTCGAGG 18044 Query 160424 TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || ||||| || ||| |||| | |||| || | |||||||| ||||||| Sbjct 18043 TCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATTTCCCAGAT 17988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792095124728320