Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq181 91.5 1e-13 seq135 89.7 4e-13 seq400 87.8 1e-12 seq13557 86.0 4e-12 seq171 86.0 4e-12 seq4683 84.2 2e-11 seq1675 84.2 2e-11 >seq181 Length=165841 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||| ||| | |||| || || || ||||| ||||| |||| | | |||| Sbjct 158673 AGGACCAGATGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCCAGAGTCCTGCCATCC 158732 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||| || || ||| |||| || || | ||||||||||| ||| | || || || || Sbjct 158733 TCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATCCCCTCCTTATCC 158792 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || || | ||| | | | ||||| | ||| ||||| |||| || || || Sbjct 158793 TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATGGT 158851 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| ||||| || ||||||||||||||| Sbjct 158852 CTTCCCCGTCAAAGTCTTGACGAAGATCTGCATG 158885 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||||||||| ||||| ||| | || |||||||| || || |||| Sbjct 136336 TCCTTCTGAATATTATAATCCGCCAATGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAG 136395 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCG 39646 || || | |||||| |||| || | || || ||||| | || ||| | | || | Sbjct 136396 ATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTTGCTTTGACATTG 136455 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || ||||| | || ||||| || | || || || || ||||| | ||| || | Sbjct 136456 TCAATA--GTGTCAGAACTCTCCACCTCAAGCGTGATCGTCTTCCCCGTCAGAGTCTTCA 136513 Query 39707 CGAAGATCTGCAT 39719 ||||||||||||| Sbjct 136514 CGAAGATCTGCAT 136526 >seq135 Length=179161 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| ||| || || |||||||||||||| Sbjct 30699 CCTCCACGGAGACGAAGGACCAAATGGAGAGTCGATTCCTTCTGGATATTATAATCGGCG 30758 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || ||||| || || ||| | || || | | ||||||||||| || Sbjct 30759 AGGGTCCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGA 30818 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| ||||| || | ||| | | | |||||| | ||| || || Sbjct 30819 ATCCCCTCCTTGTCTTGAATTTTCGCCTTGA-CGTTGTCGATTGTGTCAGAGCTCTCGAC 30877 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || || || || || | ||||| |||||||||||||| Sbjct 30878 CTCCAGAGTGATCGTCTTCCCGGTGAGGGTTTTCACGAAGATCTGCAT 30925 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || || ||||| |||||| ||| |||| |||||||| || || |||| Sbjct 30279 TCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATCCTCCAATTGCTTTCCTGCAAAG 30338 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || || | ||||||||| | || | || || ||||| || || ||| | | | Sbjct 30339 ATCAACCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCTTGAATCTTCGCTTTGACATTG 30398 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || || || | ||| || || |||| ||| || ||||| ||||| | ||| || | Sbjct 30399 TCAATA--GTATCGGAGCTCTCAACCTCCAGAGTGATCGTTTTCCCCGTCAGAGTCTTCA 30456 Query 39707 CGAAGATCTGCAT 39719 | ||||||||||| Sbjct 30457 CAAAGATCTGCAT 30469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||||||||| || | | | |||| |||||||| || ||| | || Sbjct 30507 TCCTTCTGAATATTATAATCCGCAAGAGTCCTGCCATCCTCCAATTGCTTTCCGGCGAAG 30566 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || ||||||||||| | || | ||| || ||||| ||||| || | | Sbjct 30567 ATCAACCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCTTGAATTTTCGCCTTGACATTA 30626 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | ||| ||||| || | ||| || || || ||||||| ||||| ||| Sbjct 30627 TCGATCGTATCAGAGCTCTCCACCTCGAGAGTGATCGTCTTTCCCGTTAGGGTTTTGACG 30686 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 30687 AAGATCTGCAT 30697 >seq400 Length=129899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || |||||||| |||||| ||| |||| |||| ||| || ||| |||| Sbjct 14289 TCCTTCTGAATGTTATAATCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCGGCAAAG 14348 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | |||||| |||| || | ||||||||||| || ||| ||| | | Sbjct 14349 ATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTG 14408 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | ||| || || |||| ||| ||||| || || || ||||| || || Sbjct 14409 TCAATGGTATCGGAGCTCTCAACCTCCAGAGTGATTGTCTTGCCTGTCAAAGTCTTCACA 14468 Query 39709 AAGATCTGCAT 39719 || | |||||| Sbjct 14469 AAAACCTGCAT 14479 >seq13557 Length=10351 Score = 86.0 bits (94), Expect = 4e-12 Identities = 163/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 ||| |||| || || || | ||| ||||| | || | || || ||||| || || Sbjct 8534 CAAACATCACCACCGCGGAGACGGAGTACAAGGTGGAGGGTAGACTCCTTTTGAATGTTG 8475 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 ||||| |||||| ||| |||| |||| ||| || || |||| || || | |||||| Sbjct 8474 TAATCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGG 8415 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTG 39661 || | || | || || ||||| || ||| ||| | | ||| || || || | Sbjct 8414 TCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATA--GTATCCG 8357 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || |||| ||| || ||||| ||||| | ||| || || ||||||||||| Sbjct 8356 AGCTCTCAACCTCCAGAGTGATCGTTTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 8299 >seq171 Length=169594 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||| || | |||| ||| ||||| ||||| || || || | |||| |||| Sbjct 165795 AGCACCAGGTGAAGAGTGGATTCCTTTTGAATATTGTAGTCAGCGAGGGTGCGTCCATCC 165736 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | || || || ||||||| | | ||||| |||| ||| | |||||| ||||| Sbjct 165735 TCGAGCTGCTTGCCAGCAAAAATCAGCCTTTGCTGGTCCGGGGGGATGCCTTCCTTGTCT 165676 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | | ||| ||||| | |||||| || || | || || || Sbjct 165675 TGGATTTTGGCTTTGACATTATCTATGGTGTCAGAGCTTTCAACCTCAAGGGTTATGGTC 165616 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | |||||| |||||||||||||| Sbjct 165615 TTGCCAGTGAGAGTTTTGACGAAGATCTGCAT 165584 >seq4683 Length=32477 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 39485 AATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTAT 39544 ||||| | || || || | ||| || || | |||| || ||||| || ||||||| Sbjct 4014 AATCAGCACCACCGCGGAGACGAAGAACAAGGTGCAGGGTAGACTCTTTCTGGATATTAT 3955 Query 39545 AATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGAT 39604 | ||||||| || |||| |||||||| || ||| |||| || | | |||||||| Sbjct 3954 AGTCGGCCAGTGTACGACCATCCTCCAATTGCTTTCCGGCAAAGATCAGCCTCTGCTGAT 3895 Query 39605 CCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGC 39664 ||| || | || || || || || || ||| || | | | || || | || Sbjct 3894 CCGGCGGGATACCCTCCTTATCCTGAATCTTAGCTTTGATATTGTCAATGGTATCGGAGC 3835 Query 39665 TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||| |||| ||| || || || || || ||||| || || || ||||||||| Sbjct 3834 TCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCATG 3779 >seq1675 Length=66877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 39485 AATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTAT 39544 ||||| | || || || | ||| || || | |||| || ||||| || ||||||| Sbjct 7444 AATCAGCACCACCGCGGAGACGAAGAACAAGGTGCAGGGTAGACTCTTTCTGGATATTAT 7385 Query 39545 AATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGAT 39604 |||||||||| || |||| |||||||| || ||| |||| || | | ||||||| Sbjct 7384 AATCGGCCAATGTACGACCATCCTCCAATTGCTTTCCGGCAAAGATCAGCCTTTGCTGAT 7325 Query 39605 CCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGC 39664 ||| || | || || || || || || ||| | | | | || || | || Sbjct 7324 CCGGCGGGATACCCTCCTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTATCGGAGC 7265 Query 39665 TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||| |||| ||| || || || || || ||||| || || || ||||||||| Sbjct 7264 TCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCATG 7209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346066203260576