Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6231 104 3e-17 seq2275 95.1 1e-14 seq96093 86.0 8e-12 >seq6231 Length=25150 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || ||||| || | || ||||| || || ||||| ||||||||||| || |||| Sbjct 18378 TTCGCGGAGCGCATCGTGGCCTTTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCTTC 18437 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | ||||||||| ||||| || | ||||| ||||| |||||| |||||| Sbjct 18438 TGCGCGATATTTTGGCTCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACGAG 18497 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || || || || || ||| Sbjct 18498 TTGATCTCGCGAGATGAAGGCCTACAC 18524 >seq2275 Length=55327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 192/283 (68%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||||||| ||||| | ||| |||||||| ||||| | || ||||| | Sbjct 21626 AAAACCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCGTCATTTCC--A 21569 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | ||| | || || |||||||||||||||||||| || ||| Sbjct 21568 CCTCCCATTCCTGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATGAACACAATG 21509 Query 16092 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 || || |||| ||| || ||||| | ||||| || | | ||| || | Sbjct 21508 CACGGCGCTTTTGACTTT-----GCCTTCTCAAACAAATCCCTCACTCTCGAGGCCCCAA 21454 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 | |||||||||| |||||| || | | || | || || ||| || || | Sbjct 21453 CTCCAACAAACAGCTCCACGAACTCCGAAGCTGCGCACGAGAAGAACGGCGTGCCAGCCT 21394 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || || | ||| || || ||||| ||||| || ||||| || Sbjct 21393 CGCCGGCGACGGCACGAGCCAGAAGGGTCTTTCCGGTACCGGG 21351 >seq96093 Length=542 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/129 (75%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 |||||||||||||| |||||||||||||| |||| || ||||| | ||||||||| || Sbjct 17 TCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTATGTTCTCTTTCATCATTGCCT 76 Query 16032 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 |||| |||| | | |||| ||| || ||||||| |||||||| || || Sbjct 77 ---CCACCAATTCCAGTTCCTCTTTGCCGTCCAACAACATCAATTTCATCAATAAATACA 133 Query 16089 ATGCATGGT 16097 ||||| ||| Sbjct 134 ATGCAAGGT 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618353534947840