Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6231 104 3e-17 seq2275 91.5 2e-13 >seq6231 Length=25150 Score = 104 bits (114), Expect = 3e-17 Identities = 295/448 (66%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || |||||||||| |||||||||||| ||||||||||| | ||| ||||| ||||| Sbjct 18823 TACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCATC 18764 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTG-GCACCCCAACTTGTTTGAGGAGACG 117104 | |||||||| |||| ||| | | || | | |||||| | || | Sbjct 18763 CAATCAAATGGGTTCTGCGCATCGTAGATCTTCCCGTATCCCAACGCACCC-ACCAGCCT 18705 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| |||| ||||||| | |||| ||| |||||| || | | || Sbjct 18704 GTCAGCCACGAACTCGATGTACTGGCTCATCAGATCACCGTTCATTCCAACTAAGGCGCA 18645 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || | ||||| | | |||| || |||| ||||||||||| || ||||| | | Sbjct 18644 CGGTAACGCGTCGCACACGAACTCTCTCTCTATCTCAACCGCGTCGCGGACGATTGACTT 18585 Query 117225 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAACTCCT 117283 | || ||| | | | || | | | ||||| |||| | || || Sbjct 18584 CACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGCGAGTAGAGCAGGCACG-CGAAGTCGC 18526 Query 117284 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGAC 117343 ||| || || |||||||| || || | || || |||||| || || ||||| | | Sbjct 18525 AGTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCGGGCATCAACC 18466 Query 117344 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403 | ||||| || | |||| | || |||||||| ||| ||||||||||| |||||||| | Sbjct 18465 CGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCCTCCACGC 18406 Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 | ||||| || | | |||||| ||||| Sbjct 18405 AGGCAAAGGCCACGATGCGCTCCGCGAA 18378 >seq2275 Length=55327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||||||||||||||| ||||| | || |||||||| ||||| | || ||||| | Sbjct 21626 AAAACCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCGTCATTTCC--A 21569 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || || | | ||| | || || |||||||||||||||||||| ||||| Sbjct 21568 CCTCCCATTCCTGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATGAACACAATG 21509 Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 || || |||| ||| || | ||||| | ||| | || || ||| || | Sbjct 21508 CACGGCGCTTTTGACTTT-----GCCTTCTCAAACAAATCCCTCACTCTCGAGGCCCCAA 21454 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 | |||||||||| |||||| || | | || | || || ||| || || | Sbjct 21453 CTCCAACAAACAGCTCCACGAACTCCGAAGCTGCGCACGAGAAGAACGGCGTGCCAGCCT 21394 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || || | ||| || || ||||| ||||| || ||||| || Sbjct 21393 CGCCGGCGACGGCACGAGCCAGAAGGGTCTTTCCGGTACCGGG 21351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587710317889280