Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6231 165 2e-35 >seq6231 Length=25150 Score = 165 bits (182), Expect = 2e-35 Identities = 565/868 (65%), Gaps = 32/868 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCA-ACGAGATGTTCT 47897 |||||| ||||| ||||| ||||||||||| || |||||||||| | || | || || Sbjct 18827 CTGGTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTA-ATCAGCT 18769 Query 47898 CCATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCC 47953 |||| | || ||||| | | | || | ||||| || ||| | || Sbjct 18768 CCATCCAATCAAATGGGTTCTGCGCATCGTAGATCTTCCCGTATC----CCAACGCACCC 18713 Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA-T 48012 | ||| || || ||| |||||||||| | ||| || |||||| || | | Sbjct 18712 ACCAGCCTGTCAGCCACGAACTCGATGTACTGGCTCATCAGATCACCGTTCATTCCAACT 18653 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| ||||| || || | | ||||| ||||||||| || || || | || Sbjct 18652 AAGGCGCACGGT-AACGCGTCGCACACGAACTCTCTCTCTATCTCAACCGCGTCGCGGAC 18594 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| ||||| ||| | | | || | || ||| || | ||||||| ||| Sbjct 18593 GATTGACTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGCGAG---TAGAGCAGGCA 18537 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || ||||| | ||| | |||||| || || ||| | | |||| |||||| ||||| Sbjct 18536 CGCGAAGTCGCAGTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACC 18477 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | ||| | || ||||||||| || || || ||| || ||||||||||| Sbjct 18476 GGGCATCAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGAT 18417 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 |||||||| || || || || | ||| |||| | || ||| ||| Sbjct 18416 CCCCTCCACGCAGGCAAAGGCCACGATGCGCTCCGCGAACGTCTCGGAGCCGTC---GAT 18360 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 |||| || ||||| | |||||||| || ||| || || || || | ||||||||| Sbjct 18359 CCAGCGCAGGGCCCACTGGGCCTTCTTGGCGACGCAGGGGATGGTGTCGACGGCCCGGAA 18300 Query 48373 GAGCT---TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 ||| |||| ||| | | ||| || |||||| ||| || |||||| Sbjct 18299 GAGACGGCTCTT---CTCGTCCGAGTCTTTAATATAGGTCTCGAGGAGAAGGCTGTACAT 18243 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| || || | ||||| || ||||||||||| ||||||||||| | ||||| | || Sbjct 18242 CTCGGAATGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 18183 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || | ||| | || || |||||||| || || || || || || | Sbjct 18182 CTGTACCTCCTTCATGAAGC-GGCCGGCGAGATTCTCGAGAACGATGCCGTCGGAGGCGG 18124 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA-- 48606 | |||||||| ||||| || | | ||| || ||| |||| || | | ||| Sbjct 18123 CGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCCCCCGGGGTTAGGGTCTCCCAGT 18064 Query 48607 -GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || ||| ||| | | | ||||| || || || | |||||||| ||||| || | Sbjct 18063 GGCGCTG---GTCCTGGTCGAGGTCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCT 18007 Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693 | |||||||| |||| || ||||| || Sbjct 18006 TCTTGTACATTTCCCAGATCTCCGGGTA 17979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927947889172480