Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6231 154 3e-32 >seq6231 Length=25150 Score = 154 bits (170), Expect = 3e-32 Identities = 389/578 (67%), Gaps = 19/578 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||| |||||||||||||| | || |||||||||||| ||| | || Sbjct 17985 GAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGAC 18044 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | | ||||| | | |||| | | ||| || | ||| |||| || ||| Sbjct 18045 CTCGACCAGGACCAGCGCCACTGGGAGACCCTAACCCCGGGGGAGAAGCACTTCATCACT 18104 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || ||||||||| || | Sbjct 18105 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTCGAGAATCTCGCCGGCCGC 18164 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCAT 25712 |||| | ||| || ||| | ||||| | ||| |||||||| |||||||| || || Sbjct 18165 TTCATGAAGGAGGTACAGGTCTCGGAGG-CGCGTGCCTTCTACGGCTTCCAGATCGCGAT 18223 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769 || || | || || ||| |||| || ||||| | ||| || |||| |||| Sbjct 18224 TGAGAACATCCATTCCGAGATGTA---CAGCCTTCTCCTCGAGACCTATATTAAAGACTC 18280 Query 25770 CGCCGAG-AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | |||| |||| || || || | ||| |||| ||| ||| || || | ||||| Sbjct 18281 GGACGAGAAGAG-CCGTCTCTTCCGGGCCGTCGACACCATCCCCTGCGTCGCCAAGAAGG 18339 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | | ||||||| || |||||| || || | ||| ||||| | ||||| | || Sbjct 18340 CCCAGTGGGCCCTGCGCTGGATCGACGGCTCCGAG----ACGTTCGCGGAGCGCATCGTG 18395 Query 25888 GCCTTTG-CTGCTGTGGAGGGCATCTTTTTC-AGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 ||||||| |||| |||||||| ||||| ||| | || | | ||| || || || |||| Sbjct 18396 GCCTTTGCCTGC-GTGGAGGGGATCTTCTTCTCGGGGAGCTTCTGC-GCGATATTTTGGC 18453 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 |||| || ||| |||||||| ||| ||| || |||||| | ||| | || | Sbjct 18454 TCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATG 18513 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 | || || ||| | || || || |||||||||||| || Sbjct 18514 AAGGCCTACACTGCGACTTCGCGTGCCTGCTCTACTCG 18551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925270233671680