Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3539 105 6e-18 seq14767 96.9 3e-15 seq464 87.8 2e-12 seq382 87.8 2e-12 seq33014 84.2 2e-11 >seq3539 Length=40568 Score = 105 bits (116), Expect = 6e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||||| |||||||| ||||| |||||||||||| | |||| | || ||| Sbjct 16773 GATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGAT 16832 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||||||||||| || || ||||| ||| |||| || || Sbjct 16833 TATAACATTCAAAAGGAGTCCACTCTTCACCTGGTGTTGAG 16873 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||||| || ||||| ||||| |||||||||||| | |||| | || ||| Sbjct 20151 GATCAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGAT 20210 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||||||| ||| || || ||||| ||| | | ||| || Sbjct 20211 GATAACATTC-AAAGGAGTCGACTCTTCACCTAGCATTGAG 20250 >seq14767 Length=9121 Score = 96.9 bits (106), Expect = 3e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||||| || ||||| ||||| |||||||||||| |||||| | || ||| Sbjct 1122 GATCAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAAAACTCTTGCGGAT 1063 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||| ||| || || ||||| | | | ||||| ||| | | ||||| Sbjct 1062 TATAACATTC-AAAGGAGTCGACTCTTCCCCTAGTATTGAGACTGAGGGGAGG 1011 >seq464 Length=123775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||| | || ||||| || || |||||||||||| || | || | || ||| Sbjct 13839 GATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGTAGATCTCTTGCAGAT 13780 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||||| ||||| || || ||||| ||| |||| || || Sbjct 13779 TATAACATCCAAAAGGAGTCAACTCTTCACCTGGTTTTGAG 13739 >seq382 Length=131996 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||||| || ||||| || || |||||||||||| | |||| | || ||| Sbjct 52773 GATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACTCTTGCAGAT 52832 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| || |||||||| || ||||| ||| | || || || || | ||||| Sbjct 52833 TATAATATCCAAAAAGAGTCAACTCTCCACCTTGTTTTGAGGTTGAGGGGAGG 52885 >seq33014 Length=2228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||| | || ||||| || | |||||||||||| || |||| | || ||| Sbjct 1769 GATCAACAGAGATTGATTTTTGCCGGTTATCAATTGGAAGATGGTAGAACTCTTGCAGAT 1710 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||||| |||| ||| || ||||| ||| |||| || || Sbjct 1709 TATAACATCCAAACAGAGTC-ACTCTTCACCTGGTTTTGAG 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423808600363488