Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2275 114 2e-20 seq6231 104 3e-17 >seq2275 Length=55327 Score = 114 bits (126), Expect = 2e-20 Identities = 199/286 (70%), Gaps = 20/286 (7%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC---CCA 175371 || ||||| ||||||||||| || || || ||| |||| || || | || | || Sbjct 21351 CCCGGTACCGGAAAGACCCTTCTGGCTCGTGCCGTCGCCGGCGAGGC---TGGCACGCCG 21407 Query 175372 TTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGG 175431 ||| || |||| | || | | || |||||| |||||||||| || || ||| || Sbjct 21408 TTCTTCTCGTGCGCAGCTTCGGAGTTCGTGGAGCTGTTTGTTGGAGTTGGGGCCTCGAGA 21467 Query 175432 GTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTG 175486 || | ||| | ||||| | || ||| |||| || || ||||| ||||||| Sbjct 21468 GTGAGGGATTTGTTTGAGAAGGC-----AAAGTCAAAAGCGCCGTGCATTGTGTTCATTG 21522 Query 175487 ATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGA 175544 ||||||||||||| || || | ||| | | || || ||| | | | ||||||||| Sbjct 21523 ATGAGATTGATGCAGTTGGGAGGCAGAGAGGGGCAGGAATGGGAGGT--GGAAATGACGA 21580 Query 175545 GAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||||||||| || |||||||| | | || ||||||||||| ||| Sbjct 21581 GAGAGAACAGACTATTAATCAGTTGTTGACGGAGATGGATGGTTTT 21626 >seq6231 Length=25150 Score = 104 bits (114), Expect = 3e-17 Identities = 295/448 (66%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| |||||| | | || ||||| || |||||||| ||||||||||| ||| ||| Sbjct 18378 TTCGCGGAGCGCATCGTGGCCTTTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCTTC 18437 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| || | |||| | || ||||| || | ||||| || || |||||| || || Sbjct 18438 TGCGCGATATTTTGGCTCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACGAG 18497 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAGACTTT 65249 | || || |||||||| || || ||| || || | |||| ||||| | | | Sbjct 18498 TTGATCTCGCGAGATGAAGGCCTACACTGCGACTTCG-CGTGCCTGCTCTACTCGCTCCT 18556 Query 65250 GCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309 || | | | ||| || | | | ||||| || ||||||||||| || Sbjct 18557 CCGGATGAAGCTCACCGAGGAGCGCGTGAAGTCAATCGTCCGCGACGCGGTTGAGATAGA 18616 Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369 || || |||| | | ||||| | || || | | || |||||| ||| ||| Sbjct 18617 GAGAGAGTTCGTGTGCGACGCGTTACCGTGCGCCTTAGTTGGAATGAACGGTGATCTGAT 18676 Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGC-CACCCA 65428 | | ||||||| |||| ||| | || | || | |||||| | | | Sbjct 18677 GAGCCAGTACATCGAGTTCGTGGCTGACAGGCTGGT-GGGTGCGTTGGGATACGGGAAGA 18735 Query 65429 TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCA 65488 | | | ||| |||| |||||||| | ||||| ||||| ||| | |||||||||| Sbjct 18736 TCTACGATGCGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAAGACCA 18795 Query 65489 ACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | |||||||||||| |||||||||| || Sbjct 18796 ATTTCTTTGAGAAGAGAGTTGGGGAGTA 18823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594273761551360