Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3539 127 4e-24 seq400 120 5e-22 seq4683 118 2e-21 seq171 118 2e-21 seq135 114 2e-20 seq35007 111 3e-19 seq1675 109 1e-18 seq14767 98.7 2e-15 seq5329 91.5 3e-13 >seq3539 Length=40568 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 ||||| || | || | ||| || ||| ||||| || | | ||||| ||| || Sbjct 16867 ACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCGCAAGAGTTCTGCCATCTTCC 16808 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||| || || ||||| || | |||||||||||||||||| || ||||||||||| || Sbjct 16807 AATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGGATGCCTTCTTTATCCTGG 16748 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||| | ||| || |||||| | |||||| || ||||| || || || Sbjct 16747 ATCTTGGCTTTGACATTGTCGATGGTATCGTTACCCTCAACCTCGAGAGTGATGGTCTTC 16688 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 || ||||| ||||| || || |||||||| || || Sbjct 16687 CCAGTTAGAGTTTTCACGAAAATTTGCATGTTGTT 16653 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 ||||| ||| || ||||| || || |||||||| | |||||||||||||||||| || Sbjct 20200 GTTCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATG 20141 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC--TCAACTT 193314 ||||||||| | || || |||| ||| | ||| || | ||| | | | ||||| | Sbjct 20140 CCTTCTTTAGCCTGGATCTTGGCTTTGACATTGTCGATGGCATC--ACGGCCTTCAACCT 20083 Query 193315 CTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 | ||||| || || || | ||||| ||||| | || |||||||| || || Sbjct 20082 CAAGAGTGATGGTCTTCCTAGTTAGTGTTTTCATGAAAATTTGCATGTTGTT 20031 >seq400 Length=129899 Score = 120 bits (132), Expect = 5e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 193129 ATAT-ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAG 193187 |||| |||||| | | |||||| || || || | ||||| ||| || ||| ||||| Sbjct 14247 ATATCACCACCACGGAGTCGAAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTATAA 14306 Query 193188 TCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCA 193247 || | || || | ||| || | ||| ||||||||||| || || ||||| || || Sbjct 14307 TCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCC 14366 Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 || || ||||||||||| ||||| || || | ||| | ||| ||| |||||||| | Sbjct 14367 GGTGGGATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCGGAGCTC 14426 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| || || || ||||| | || || ||||| | ||||| Sbjct 14427 TCAACCTCCAGAGTGATTGTCTTGCCTGTCAAAGTCTTCACAAAAACCTGCAT 14479 >seq4683 Length=32477 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| || || |||| |||| |||||| ||||||||||||| Sbjct 4007 ACCACCGCGGAGACGAAGAACAAGGTGCAGGGTAGACTCTTTCTGGATATTATAGTCGGC 3948 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || ||||| ||||||||||| || | ||||| ||||| || || Sbjct 3947 CAGTGTACGACCATCCTCCAATTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCCGGCGG 3888 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || ||||| || || || | ||| ||||| ||| |||||||| ||| || Sbjct 3887 GATACCCTCCTTATCCTGAATCTTAGCTTTGATATTGTCAATGGTATCGGAGCTCTCCAC 3828 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || | || || ||||| || ||||| Sbjct 3827 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 3780 >seq171 Length=169594 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| |||| |||| || | ||| || ||||||||||||| Sbjct 166497 ATACCACCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTCTGAATATTATAGTCG 166438 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || |||||||| |||||||| || || || Sbjct 166437 GCGAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAATCTCTGCTGGTCTGGG 166378 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| || || ||||| | ||| | ||| ||| || || || || Sbjct 166377 GGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACATTATCAATCGTGTCAGAGCTTTCC 166318 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||| || || || || || ||||| |||||||| Sbjct 166317 ACTTCCAGAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 166268 >seq135 Length=179161 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || || || | ||||| ||| || ||| || || || | Sbjct 30242 ACCACCGCGGAGACGGAGGACAAGGTGGAGTGTAGACTCCTTTTGAATGTTGTAATCAGC 30301 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| || ||||| ||||| ||||| || || ||||| |||||||| || Sbjct 30302 CAAAGTGCGGCCATCCTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCAGGTGG 30361 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || || ||||| || || | ||| | ||| |||||||||||| |||||| Sbjct 30362 GATCCCCTCCTTGTCTTGAATCTTCGCTTTGACATTGTCAATAGTATCGGAGCTCTCAAC 30421 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || ||||| || || || || || ||||| || ||||| Sbjct 30422 CTCCAGAGTGATCGTTTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 30469 >seq35007 Length=2034 Score = 111 bits (122), Expect = 3e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 193129 ATAT-ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAG 193187 |||| |||||| | | || || || || || | ||||| ||| || ||| ||||| Sbjct 1898 ATATCACCACCACGGAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTATAA 1839 Query 193188 TCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCA 193247 || | || || | ||| || | ||| ||||||||||| || || ||||| || || Sbjct 1838 TCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCC 1779 Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 || || |||||||| || ||||| || || | ||| | ||| ||| |||||||| | Sbjct 1778 GGTGGGATTCCTTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCGGAGCTC 1719 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || | ||| || || || ||||| | || || |||||||| ||||| Sbjct 1718 TCAACCTCCAAAGTGATTGTCTTGCCTGTCAAGGTCTTGACAAATATCTGCAT 1666 >seq1675 Length=66877 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| || || |||| |||| |||||| |||||||| |||| Sbjct 7437 ACCACCGCGGAGACGAAGAACAAGGTGCAGGGTAGACTCTTTCTGGATATTATAATCGGC 7378 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | | ||| || ||||| ||||||||||| || | || || ||||| || || Sbjct 7377 CAATGTACGACCATCCTCCAATTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCCGGCGG 7318 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || ||||| || || || | ||| | ||| ||| |||||||| ||| || Sbjct 7317 GATACCCTCCTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTATCGGAGCTCTCCAC 7258 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || | || || ||||| || ||||| Sbjct 7257 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 7210 >seq14767 Length=9121 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || || |||||||| | |||||||||||||||||| || ||| |||| Sbjct 1081 ATCTTCCAATTGCTTGCCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATGCCTACTTT 1140 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 | | || || |||| ||| | ||| || ||||| |||||| || ||||| || Sbjct 1141 AGCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCCCTCAACCTCAAGAGTGAT 1200 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 || || | ||||| ||||| | || |||||||| || || Sbjct 1201 GGTCTTCCTAGTTAGTGTTTTCATGAAAATTTGCATGTTGTT 1242 >seq5329 Length=29078 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| ||||| || | | ||||| ||| || ||||| || || |||||||| | ||| Sbjct 25763 AATGTTATAATCCGCAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAGTCT 25822 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||||||| || ||||||||| | || || |||| ||| | ||| || || Sbjct 25823 --GTTGATCAGGAGGGATGCCTTCTTTAGCCTGGATCTTGGCTTTGACATTGTCGATGGT 25880 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||||| || ||||| | || || | ||||| ||||| | || ||||| Sbjct 25881 ATCACTGCCCTCAACCTCAAGAGTGGTGGTCTTCCTAGTTAGTGTTTTCATGAAAATTTG 25940 Query 193358 CATTTTATT 193366 ||| || || Sbjct 25941 CATGTTGTT 25949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896192170007040