Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq171 100 4e-16 seq3539 98.7 1e-15 seq277752 91.5 2e-13 seq5329 91.5 2e-13 seq459 91.5 2e-13 seq13688 89.7 7e-13 seq464 89.7 7e-13 >seq171 Length=169594 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| || || | ||||| ||| ||| Sbjct 166268 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTCTGGAAGTGGAAAGCTCT 166327 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| |||||| || || ||||| || || || ||||| || Sbjct 166328 GACACGATTGATAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCCCCAGACCAG 166387 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| ||||||||||| || ||| || || | | || |||||| Sbjct 166388 CAGAGATTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTCGCCGACTATAAT 166447 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || || || ||| Sbjct 166448 ATTCAGAAGGAGTCCACTCTGCACTTGGTG 166477 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | ||||| ||||| || || || || || || ||| Sbjct 165812 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCC 165871 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || ||||| ||||| || || || ||||| || Sbjct 165872 GACACCATTGACAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 165931 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || ||||| || || ||| | | || | | ||||| ||| Sbjct 165932 CAGAGACTTATCTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTGGCTGATTACAAT 165991 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTG 156032 || || |||| || |||| |||||||||||| Sbjct 165992 AT-TCAAAAGGAGTCGACCCTTCATTTAGTG 166021 >seq3539 Length=40568 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| || || |||||| | ||| | || || || || | || || ||| Sbjct 20031 AACAACATGCAAATTTTCATGAAAACACTAACTAGGAAGACCATCACTCTTGAGGTTGAA 20090 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 | |||| || || || ||| || || || | |||||||||||| ||||| Sbjct 20091 GGCCGTGATGCCATCGACAATGTCAAAGCCAAGATCCAGGCTAAAGAAGGCATCCCTCCT 20150 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| ||| |||||| ||| || ||||| | |||||| ||||||| | | ||| Sbjct 20151 GATCAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGAT 20210 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCA 156025 |||| || || || ||| |||| ||||| Sbjct 20211 GATAACAT-TCAAAGGAGTCGACTCTTCA 20238 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| || | ||||| | ||||| || || || || | || || || Sbjct 16653 AACAACATGCAAATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGAG 16712 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 | | |||| || || || ||| || || || |||||||||||||| ||||| Sbjct 16713 GGTAACGATACCATCGACAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATCCCTCCT 16772 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| ||| |||| | ||| || ||||| | |||||| ||||||| | | ||| Sbjct 16773 GATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGAT 16832 Query 155997 TATAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAG 156037 ||||| || || ||| ||| | || ||||| | ||||| || Sbjct 16833 TATAACAT-TCAAAAGGAGTCCACTCTTCACCTGGTGTTGAG 16873 >seq277752 Length=210 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || || || |||||||||| |||||||||||| | Sbjct 102 CAGGATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCCGGTAAGCAATTG 43 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 |||||| ||||||| | ||||||||| | ||||||| Sbjct 42 GAAGATGGCAGAACTCTTGCAGATTATA--ACATCCAAA 6 >seq5329 Length=29078 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| || || |||||| | ||| | || || | || | || || || Sbjct 25949 AACAACATGCAAATTTTCATGAAAACACTAACTAGGAAGACCACCACTCTTGAGGTTGAG 25890 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 | ||||| || || || ||| || || || | |||||||||||| ||||| Sbjct 25889 GGCAGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGCTAAAGAAGGCATCCCTCCT 25830 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||| ||| |||||| ||| || ||||| | |||||| ||||||| | | ||| Sbjct 25829 GATCAAC--AGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGAT 25772 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCA 156025 ||||| || || || ||| |||| ||||| Sbjct 25771 TATAACAT-TCAAAGGAGTCGACTCTTCA 25744 >seq459 Length=124062 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || || || || || |||| Sbjct 120814 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 120873 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || || || ||||| ||||| || || Sbjct 120874 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 120933 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| || ||| || | ||||| || Sbjct 120934 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGGAGGACTCTAGCGGATTACAAC 120993 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| |||| ||||| Sbjct 120994 ATCCAGAAGGAGTCGACTCTTCA 121016 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || | ||||| || || || || || || || ||| || Sbjct 120585 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACCTTGGAGGTGGAAAGCTC 120644 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || || || || || || || ||||||||||| || ||||| || Sbjct 120645 TGATACAATTGACAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 120704 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || |||||||| |||||| || || | |||| || || Sbjct 120705 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTACAA 120764 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| |||| || ||||| ||| Sbjct 120765 CATTCAGAAGGAGTCGACTCTGCATTTGGTG 120795 >seq13688 Length=10182 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || || || |||||||||| |||||||||||| | Sbjct 6827 CAGGATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCCGGTAAGCAATTG 6886 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCA 156025 ||||| ||||||| | ||||||||| | ||||||| ||| | || ||||| Sbjct 6887 GAAGAAGGCAGAACTCTTGCAGATTATA--ACATCCAAAAGGAGTCAACTCTTCA 6939 >seq464 Length=123775 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || ||||| |||||||||| |||||||||||| | Sbjct 13863 CAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTG 13804 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCA 156025 |||||| ||| || | ||||||||| | ||||||| ||| | || ||||| Sbjct 13803 GAAGATGGTAGATCTCTTGCAGATTATA--ACATCCAAAAGGAGTCAACTCTTCA 13751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729055463795200