Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1675 114 3e-20 seq3539 111 3e-19 seq135 109 1e-18 seq14767 102 2e-16 seq35007 100 6e-16 seq400 98.7 2e-15 seq171 98.7 2e-15 seq5329 93.3 8e-14 seq382 91.5 3e-13 seq181 91.5 3e-13 >seq1675 Length=66877 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | |||| |||||| |||||||||||| | Sbjct 7437 ACCACCGCGGAGACGAAGAACAAGGTGCAGGGTAGACTCTTTCTGGATATTATAATCGGC 7378 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||| || |||| |||||||| || || |||||||| | || || ||||| || || Sbjct 7377 CAATGTACGACCATCCTCCAATTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCCGGCGG 7318 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || ||||| || || ||| ||| ||||| || | ||| || || || Sbjct 7317 GATACCCTCCTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTATCGGAGCTCTCCAC 7258 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || ||||| || || || | ||| |||||||| Sbjct 7257 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 7210 >seq3539 Length=40568 Score = 111 bits (122), Expect = 3e-19 Identities = 145/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || |||||||| | | |||| |||| |||||||| || |||||||||| Sbjct 16847 CTTTTGA-ATGTTATAATCCGCAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGA 16789 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||||||||||||||| || || ||||||||||| || || || ||| ||||| Sbjct 16788 TCAGTCTCTGTTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTGT 16729 Query 192467 TTATAGAATC-TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | ||| | || || || || ||||| ||||| || ||||||| ||||| | Sbjct 16728 CGATGGTATCGTTAC-CCTCAACCTCGAGAGTGATGGTCTTCCCAGTTAGAGTTTTCACG 16670 Query 192526 AATATCTGCATTTTATT 192542 || || ||||| || || Sbjct 16669 AAAATTTGCATGTTGTT 16653 Score = 111 bits (122), Expect = 3e-19 Identities = 171/241 (71%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | || || || || | ||| ||| || | ||| | ||| || || || |||| | Sbjct 20268 ATAGTTCCTCCCCTCAGCCTCAATGCTAGGTGAAGAGTCGACTCCTTTGA-ATGTTATCA 20210 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | |||| |||| |||||||| || |||||||| || | ||||||||||||| Sbjct 20209 TCCGCAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAGTCTCTGTTGATCA 20150 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACG-- 192481 || || || ||||||||| | || || || ||| ||||| || | ||| ||| Sbjct 20149 GGAGGGATGCCTTCTTTAGCCTGGATCTTGGCTTTGACATTGTCGATGGCATC--ACGGC 20092 Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTAT 192541 ||| || || ||||| ||||| || | ||||| |||||| || || || ||||| || | Sbjct 20091 CTTCAACCTCAAGAGTGATGGTCTTCCTAGTTAGTGTTTTCATGAAAATTTGCATGTTGT 20032 Query 192542 T 192542 | Sbjct 20031 T 20031 >seq135 Length=179161 Score = 109 bits (120), Expect = 1e-18 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||||| | || | || | |||| ||| ||| || || || ||||||| Sbjct 30242 ACCACCGCGGAGACGGAGGACAAGGTGGAGTGTAGACTCCTTTTGA-ATGTTGTAATCAG 30300 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 || || || |||| |||||||| || || |||||||| || ||||| |||||||||| Sbjct 30301 CCAAAGTGCGGCCATCCTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCAGGTG 30360 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || || || || ||||| || || ||| ||||| |||| ||| || || | Sbjct 30361 GGATCCCCTCCTTGTCTTGAATCTTCGCTTTGACATTGTCAATAGTATCGGAGCTCTCAA 30420 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || ||||| || ||||| || || | || || | ||| |||||||| Sbjct 30421 CCTCCAGAGTGATCGTTTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 30469 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| | | || | ||| | ||| | ||| || ||||||||||| Sbjct 30468 ATACCACCACGAAGCCTGAGCACAAGATGAAGAGTCGACTCCTTCTGAATATTATAATCC 30527 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| |||||||| || || || ||||| || | ||| ||||| || Sbjct 30528 GCAAGAGTCCTGCCATCCTCCAATTGCTTTCCGGCGAAGATCAACCGCTGCTGATCTGGC 30587 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| ||||| || |||||| || | ||| || || Sbjct 30588 GGAATGCCCTCCTTGTCTTGAATTTTCGCCTTGACATTATCGATCGTATCAGAGCTCTCC 30647 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || || |||| ||||| | || |||||||| Sbjct 30648 ACCTCGAGAGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 30697 >seq14767 Length=9121 Score = 102 bits (112), Expect = 2e-16 Identities = 169/241 (70%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | || || || || | ||||||| | | ||| | ||| || || || |||||| Sbjct 1005 ATAGTTCCTCCCCTCAGTCTCAATACTAGGGGAAGAGTCGACTCCTTTGA-ATGTTATAA 1063 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | ||| |||| |||||||| || |||||||| || | ||||||||||||| Sbjct 1064 TCCGCAAGAGTTTTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAGTCTCTGTTGATCA 1123 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT--CTGACG 192481 || || || ||| ||||| | || || || ||| ||||| || | || ||| | Sbjct 1124 GGAGGGATGCCTACTTTAGCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCC- 1182 Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTAT 192541 || || || ||||| ||||| || | ||||| |||||| || || || ||||| || | Sbjct 1183 -CTCAACCTCAAGAGTGATGGTCTTCCTAGTTAGTGTTTTCATGAAAATTTGCATGTTGT 1241 Query 192542 T 192542 | Sbjct 1242 T 1242 >seq35007 Length=2034 Score = 100 bits (110), Expect = 6e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | |||| ||| || || |||||||||| Sbjct 1893 ACCACCACGGAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTATAATCAGC 1834 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||| ||| || || |||||||| || ||||| || || ||||| Sbjct 1833 CAAAGTGCGGCCATCCTCCAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 1774 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || ||||| || || ||| ||||| || | ||| || || || Sbjct 1773 GATTCCTTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCGGAGCTCTCAAC 1714 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| || || || || || || || || | |||||||||||| Sbjct 1713 CTCCAAAGTGATTGTCTTGCCTGTCAAGGTCTTGACAAATATCTGCAT 1666 >seq400 Length=129899 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||||||||| || || || |||| |||| ||| || || |||||||| || ||| Sbjct 14298 ATGTTATAATCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCGGCAAAGATCAACCTC 14357 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| ||||||||||| ||||| || || ||| ||||| || | | Sbjct 14358 TGCTGGTCCGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTA 14417 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || ||||| || || || || || || || || | ||| | |||| Sbjct 14418 TCGGAGCTCTCAACCTCCAGAGTGATTGTCTTGCCTGTCAAAGTCTTCACAAAAACCTGC 14477 Query 192535 AT 192536 || Sbjct 14478 AT 14479 >seq171 Length=169594 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | |||||| | |||||||| | || | ||| ||| || ||||| ||||| Sbjct 166041 ATGCCACCACGAAGACGGAGCACTAAATGAAGGGTCGACTCCTTTTGA-ATATTGTAATC 165983 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| || | ||| || ||||||||||| | |||||| || || || Sbjct 165982 AGCCAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATAAGTCTCTGCTGGTCTGG 165923 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || ||||| ||||| || || || ||||| || | || || || Sbjct 165922 TGGGATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCGGAACTCTC 165863 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || |||||||| ||||| | || |||| ||| || ||||| Sbjct 165862 AACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 165812 >seq5329 Length=29078 Score = 93.3 bits (102), Expect = 8e-14 Identities = 155/220 (70%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 |||| || || | ||| | ||| || || || |||||||| | | |||| |||| Sbjct 25735 AATAGTAGGTGAAGAGTCGACTCCTTTGA-ATGTTATAATCCGCAAGAGTTCTGCCATCT 25793 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 |||||||| || |||||||| || | ||| |||||||||| || || ||||||||| | Sbjct 25794 TCCAATTGCTTGCCAGCAAAAATCAGTCT--GTTGATCAGGAGGGATGCCTTCTTTAGCC 25851 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAAT--CTGACGATTCTACTTCTAGAGTAATGG 192502 || || || ||| ||||| || | || ||| | || || || ||||| ||| Sbjct 25852 TGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCC--CTCAACCTCAAGAGTGGTGG 25909 Query 192503 TTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 | || | ||||| |||||| || || || ||||| || || Sbjct 25910 TCTTCCTAGTTAGTGTTTTCATGAAAATTTGCATGTTGTT 25949 >seq382 Length=131996 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 192339 AGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 ||| | |||||| |||||||||||| | | ||||| |||| |||||||| ||||| Sbjct 52856 AGTTGACTCTTTTTGGATATTATAATCTGCAAGAGTTCGACCATCTTCCAATTGCTTACC 52797 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 |||||| || | |||||| |||||||| || || ||||| ||||| || Sbjct 52796 AGCAAAAATCAGTCTCTGCTGATCAGGAGGGATGCCTTCCTTATCCTG 52749 >seq181 Length=165841 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | |||| ||| || ||||||||||| | Sbjct 136299 ACCACCGCGGAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCCGC 136358 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||| || | || |||||||| || ||||||||||| || ||||| || || ||||| Sbjct 136359 CAATGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGG 136418 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || ||||| || || ||| ||||| |||| || || || || Sbjct 136419 GATTCCCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATAGTGTCAGAACTCTCCAC 136478 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || | || || | || |||||||| Sbjct 136479 CTCAAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 136526 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || || || | || | ||| || |||||||||||||| Sbjct 158429 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATATTATAATCAGC 158488 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | || || || |||||||| | ||||| || || ||||| Sbjct 158489 CAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGG 158548 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || || || ||| |||||| || | ||| || || || Sbjct 158549 GATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTATCGGAGCTCTCCAC 158608 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| || || ||||| | || || | || |||||||| Sbjct 158609 CTCCAGAGTAATTGTCTTGCCAGTCAGAGTCTTCACGAAAATCTGCAT 158656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980596610347200