Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq14767 114 2e-20 seq3539 114 2e-20 seq181 98.7 2e-15 seq5329 96.9 6e-15 seq400 96.9 6e-15 seq35007 95.1 2e-14 seq382 87.8 3e-12 seq171 87.8 3e-12 seq1675 86.0 1e-11 seq464 86.0 1e-11 seq135 86.0 1e-11 >seq14767 Length=9121 Score = 114 bits (126), Expect = 2e-20 Identities = 173/243 (71%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || || || |||| ||||||| | | ||| | ||| || ||| | |||| Sbjct 1003 TCATAGTTCCTCCCCTCAGTCTCAATACTAGGGGAAGAGTCGACTCCTTTGAA-TGTTAT 1061 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | | || | | || |||||||| || ||||||||||| | ||||||||| | Sbjct 1062 AATCCGCAAGAGTTTTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAGTCTCTGTTGAT 1121 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTAT--CTGA 172012 |||| || || ||| ||||| | || || || ||| ||||| || |||| ||| Sbjct 1122 CAGGAGGGATGCCTACTTTAGCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTGC 1181 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || || || ||||| ||||| || | ||||| |||||| ||||| || ||||| || Sbjct 1182 C--CTCAACCTCAAGAGTGATGGTCTTCCTAGTTAGTGTTTTCATGAAAATTTGCATGTT 1239 Query 172073 ATT 172075 || Sbjct 1240 GTT 1242 >seq3539 Length=40568 Score = 114 bits (126), Expect = 2e-20 Identities = 173/243 (71%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || || || || | ||| ||| || | ||| | ||| || ||| | |||| Sbjct 20270 TCATAGTTCCTCCCCTCAGCCTCAATGCTAGGTGAAGAGTCGACTCCTTTGAA-TGTTAT 20212 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 ||| | | || || | || |||||||| || ||||||||||| | ||||||||| | Sbjct 20211 CATCCGCAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAGTCTCTGTTGAT 20152 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACG 172014 |||| || || ||||||||| | || || || ||| ||||| || | ||| ||| Sbjct 20151 CAGGAGGGATGCCTTCTTTAGCCTGGATCTTGGCTTTGACATTGTCGATGGCATC--ACG 20094 Query 172015 --ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| || || ||||| ||||| || | ||||| |||||| ||||| || ||||| || Sbjct 20093 GCCTTCAACCTCAAGAGTGATGGTCTTCCTAGTTAGTGTTTTCATGAAAATTTGCATGTT 20034 Query 172073 ATT 172075 || Sbjct 20033 GTT 20031 Score = 109 bits (120), Expect = 1e-18 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || || || || | || || | || | ||| | ||| || ||| |||| Sbjct 16893 TCATAGTTCCTCCCCTCAGCCTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTAT 16834 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | | || || | || |||||||| || |||||||| || | ||||||||| | Sbjct 16833 AATCCGCAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGAT 16774 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATC-TGAC 172013 |||| || || ||||||||||| || || || ||| ||||| || ||||| | || Sbjct 16773 CAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGTTAC 16714 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || || || ||||| ||||| || ||||||| ||||| | ||| || ||||| || Sbjct 16713 -CCTCAACCTCGAGAGTGATGGTCTTCCCAGTTAGAGTTTTCACGAAAATTTGCATGTTG 16655 Query 172074 TT 172075 || Sbjct 16654 TT 16653 >seq181 Length=165841 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || |||||||||||| | || | || |||| |||||||| || ||| Sbjct 136330 GTAGACTCCTTCTGAATATTATAATCCGCCAATGTGCGACCGTCCTCCAATTGCTTTCCA 136389 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || || ||||| ||||| ||||| ||||| || || ||||| || || ||| Sbjct 136390 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTTGCTTTG 136449 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 ||||| ||||| || || || || || || || || || || || || | || Sbjct 136450 ACATTGTCAATAGTGTCAGAACTCTCCACCTCAAGCGTGATCGTCTTCCCCGTCAGAGTC 136509 Query 172053 TTAATGAATATCTGCAT 172069 || | ||| |||||||| Sbjct 136510 TTCACGAAGATCTGCAT 136526 >seq5329 Length=29078 Score = 96.9 bits (106), Expect = 6e-15 Identities = 156/220 (71%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 |||| || || | ||| | ||| || ||| | |||||||| | | || || | || Sbjct 25735 AATAGTAGGTGAAGAGTCGACTCCTTTGAA-TGTTATAATCCGCAAGAGTTCTGCCATCT 25793 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 |||||||| || ||||||||||| | ||||||| ||||| || || ||||||||| | Sbjct 25794 TCCAATTGCTTGCCAGCAAAAATCA--GTCTGTTGATCAGGAGGGATGCCTTCTTTAGCC 25851 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTAT--CTGACGATTCTACTTCTAGAGTAATGG 172035 || || || ||| ||||| || |||| ||| | || || || ||||| ||| Sbjct 25852 TGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCC--CTCAACCTCAAGAGTGGTGG 25909 Query 172036 TTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 | || | ||||| |||||| ||||| || ||||| || || Sbjct 25910 TCTTCCTAGTTAGTGTTTTCATGAAAATTTGCATGTTGTT 25949 >seq400 Length=129899 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| | || | || | |||| ||| || ||| |||||||| | Sbjct 14252 ACCACCACGGAGTCGAAGGACAAGGTGGAGTGTAGACTCCTTCTGAATGTTATAATCAGC 14311 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || |||| ||| || || ||||| || || ||||| ||||| ||||| Sbjct 14312 CAAAGTGCGGCCATCCTCCAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 14371 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| ||||| || || ||| ||||| || ||||| || || || Sbjct 14372 GATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCGGAGCTCTCAAC 14431 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || || || || | || | |||||| Sbjct 14432 CTCCAGAGTGATTGTCTTGCCTGTCAAAGTCTTCACAAAAACCTGCAT 14479 >seq35007 Length=2034 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || ||| |||||||| | |||| || | || |||| ||| || || Sbjct 1862 GTAGACTCCTTCTGAATGTTATAATCAGCCAAAGTGCGGCCATCCTCCAGTTGCTTTCCG 1803 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || || ||||| ||||| ||||| |||||||| || ||||| || || ||| Sbjct 1802 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTTTGCTTTG 1743 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 ||||| || ||||| || || || || | ||| || || || || || || || Sbjct 1742 ACATTGTCAATGGTATCGGAGCTCTCAACCTCCAAAGTGATTGTCTTGCCTGTCAAGGTC 1683 Query 172053 TTAATGAATATCTGCAT 172069 || | ||||||||||| Sbjct 1682 TTGACAAATATCTGCAT 1666 >seq382 Length=131996 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| ||||||||||||| | || ||| | || |||||||| ||||| Sbjct 52856 AGTTGACTCTTTTTGGATATTATAATCTGCAAGAGTTCGACCATCTTCCAATTGCTTACC 52797 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||||||| | |||||| || ||||| || || ||||| ||||| || Sbjct 52796 AGCAAAAATCAGTCTCTGCTGATCAGGAGGGATGCCTTCCTTATCCTG 52749 >seq171 Length=169594 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | || || ||||| || || || ||||| || ||||| ||| Sbjct 165729 TGCTTGCCAGCAAAAATCAGCCTTTGCTGGTCCGGGGGGATGCCTTCCTTGTCTTGGATT 165670 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| |||||| ||| || || || ||| || || || || ||||| || ||| Sbjct 165669 TTGGCTTTGACATTATCTATGGTGTCAGAGCTTTCAACCTCAAGGGTTATGGTCTTGCCA 165610 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | ||| |||||||| Sbjct 165609 GTGAGAGTTTTGACGAAGATCTGCAT 165584 >seq1675 Length=66877 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| ||||||||||| | || | || | || |||||||| || || Sbjct 7406 GTAGACTCTTTCTGGATATTATAATCGGCCAATGTACGACCATCCTCCAATTGCTTTCCG 7347 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | || || || || || || || || || ||||| || || ||| ||| Sbjct 7346 GCAAAGATCAGCCTTTGCTGATCCGGCGGGATACCCTCCTTATCCTGAATCTTAGCTTTG 7287 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 ||||| || ||||| || || || || ||||| ||||| || ||||| || || Sbjct 7286 ACATTGTCAATGGTATCGGAGCTCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTC 7227 Query 172053 TTAATGAATATCTGCAT 172069 || | || |||||||| Sbjct 7226 TTCACAAAAATCTGCAT 7210 >seq464 Length=123775 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || || || || | || || | || | ||| | ||| || || |||| Sbjct 13719 TCATAGTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGAGTTGACTCCTTTTGGATGTTAT 13778 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | ||||| | || |||||||| ||||| |||||||| ||||||||||| | Sbjct 13779 AATCTGCAAGAGATCTACCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGAT 13838 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||| ||||| || Sbjct 13839 CAGGAGGGATGCCTTCCTTATCCTG 13863 >seq135 Length=179161 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| | | || | ||| | ||| | ||| || |||||||||||| Sbjct 30468 ATACCACCACGAAGCCTGAGCACAAGATGAAGAGTCGACTCCTTCTGAATATTATAATCC 30527 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | || |||||||| || || || || || || | ||| || || || Sbjct 30528 GCAAGAGTCCTGCCATCCTCCAATTGCTTTCCGGCGAAGATCAACCGCTGCTGATCTGGC 30587 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| || |||||| || ||||| || || Sbjct 30588 GGAATGCCCTCCTTGTCTTGAATTTTCGCCTTGACATTATCGATCGTATCAGAGCTCTCC 30647 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || || |||| ||||| | ||| |||||||| Sbjct 30648 ACCTCGAGAGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 30697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901652674617600