Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq398 131 5e-25 seq1248 122 3e-22 seq35 102 2e-16 >seq398 Length=130292 Score = 131 bits (144), Expect = 5e-25 Identities = 235/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| |||||| | |||||| || |||||| ||| | | | | Sbjct 32497 ATTTCTCACAGTCCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 32438 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||||| || || || ||||| || ||||| | | ||| || Sbjct 32437 CTGGATATACCCAGTCTCGGATGTCTTAACTGCAGTATCTATAAGACCTTCCCTACCTCC 32378 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | ||| | || ||| || | || | || |||| || || Sbjct 32377 CATAGCATGAAAAAAGAACTCCTGTGGAGTTAGTCCTCGAAGGTATGAATTCTCTACAAA 32318 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || ||||| |||| || | || | | | Sbjct 32317 GCCACGACTTTCTGGTCCATAGTCGTCCTTAGTGAAGTGGGGCAAAGTACGGTCTATGA- 32259 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||||||| || || || ||||| ||||||||||||| || | | ||||||| | Sbjct 32258 ACCCATATGGGATTCGTTTACCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGTG 32199 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | || || | | ||| ||||| |||||||| | |||||| Sbjct 32198 ATATGTTGATAAAACTTCCCTTAGAGCCAGCTGTAACCATA 32158 Score = 120 bits (132), Expect = 9e-22 Identities = 232/340 (68%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| |||||| || |||||| || |||||| ||| | | | | Sbjct 20786 ATTTCTGACAGTCCCATCATATTTAACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 20727 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| |||||| || || || |||||||| | || | | |||||| Sbjct 20726 CTGGATATACCCAGTCTCAGATGTCTTAACTGCAGTATCAATAATGCCTTCCCTACCACC 20667 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || | | ||| | || || || | | |||| |||| || || Sbjct 20666 CATAGCATGAAAATAAAACTCCTGTGGAGTTAATCCACGCAGGTAGGAATTCTCTACAAA 20607 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || ||| ||| ||||| || |||| |||| || | | | Sbjct 20606 GCCACGACTTTCCGGTCCATAATCGTCCTTCGTAAAATGGGGCAAAGTCCGGTCTGTGA- 20548 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || | || || ||||| || ||||| ||||||||||||| || | | ||||||||| Sbjct 20547 ACCCAAACGGAATTCGCTTACCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGCG 20488 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||||| | | ||| ||||| || || || | ||||| Sbjct 20487 ATATATTGATAAAACTTCCCTTCGATCCGGCTGTGACCAT 20448 >seq1248 Length=79308 Score = 122 bits (134), Expect = 3e-22 Identities = 281/416 (68%), Gaps = 8/416 (2%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 ||||||||||||| || | | ||||| | ||| || ||||| ||||||||| | Sbjct 54372 TAAATCCATCCATTTCAGTAAGCAGCTGATTCAATGTCTGCTCCCTCTCATCATTTCCTC 54313 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | ||| || | || ||| ||| | ||||||||||||||||| |||||||||| Sbjct 54312 CACC--AATT-CCTG--TCCCTC-TTTGCCTCCCAACAGCATCAATTTCATCAATGAAAA 54259 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 || ||||| ||||| | | | || | || || |||||||| | || ||||| | Sbjct 54258 CCAAGCACGGCGAATTCTCTTTTGCCTTGTTGAACAAGTCTCTTACTCTAGAAGCTCCTA 54199 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 || ||| |||| || | || || || | || | || ||| | || ||| | Sbjct 54198 CTCCTACAAACATCTCAATGAACTCTGACCCTGACAGAGAAAAGAAAGGCACCGCTGCCT 54139 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | ||||| | ||| | |||| | |||||| || || || ||||| || |||| |||| Sbjct 54138 CTCCTGCAATGGCCTTACCCAGCAATGTCTTTCCGGTCCCTGGTGGCCCTACTAAAAGAA 54079 Query 289238 CTCCCTTTGGTACTT-TTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | |||||||| | || |||| ||| | | | | ||||| || | || | |||||| Sbjct 54078 C-CCCTTTGGGAATTCTTGCACCAACCGCAGCAAACTTCTCTGGAGTTTTGAGAAATTCA 54020 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||||| || | | || | ||||| ||||| || || |||||| |||| || Sbjct 54019 ACAATCTCTTGGAAATCTTGCTTTGCTTCATCGACCCCAGCCACATCATCAAATGT 53964 >seq35 Length=286333 Score = 102 bits (112), Expect = 2e-16 Identities = 213/315 (68%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||||| || ||||| || || | || || | | |||||| || | | Sbjct 6175 CCAATTGCATCAATCTCATCAATAAATATTATACTAGGTGCACATTGTCTTGCCTCTTGA 6234 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| | || | |||| |||| ||||||| ||||||| | ||| || ||| | Sbjct 6235 AATAAACTCCGAACCCTTGATGGCCCAACACCAACAAACATTTCCATAAAATCCGAACCA 6294 Query 289150 GATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | || ||| || || | ||| ||||| |||| | || | ||| || || Sbjct 6295 GATA-TAGATAGAAATGGCACCCCAGATTCACCTGCAGTTGCCTTTGCAATAAGAGTTTT 6353 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || ||||| || || || | | || | || ||||| | |||||| || || Sbjct 6354 TCCAGTTCCGGGAGGGCCAACAAGAAGGGCACCTTTTGGAATTTTTGCTCCCAATTCCTC 6413 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 |||||||| |||| |||| | ||| | |||| |||| || ||| | || |||||||| Sbjct 6414 ATATTTCTTAGGGTTCTTGAGAAAGTGCACAAATTCCATAATTTCTTGCTTAGCCTCATC 6473 Query 289329 ACATCCTGCTACATC 289343 ||| || |||||||| Sbjct 6474 ACAGCCAGCTACATC 6488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466011853576864