Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6231 214 2e-49 >seq6231 Length=25150 Score = 214 bits (236), Expect = 2e-49 Identities = 226/295 (77%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||||||||| || ||||||||||||||||| ||||| | | |||| | || || Sbjct 18238 GAATGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGT 18179 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| |||||||| || |||||| |||||||||||| ||||||||| Sbjct 18178 ACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGAACGATGCCGTCGGAGGCGGCGAAG 18119 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| ||||| ||| | | | || | | |||||||| || Sbjct 18118 AAGGCGAGGACGTGAGTGATGAAGTGCTTCTCCCCCGGGGTTAGGGTCTCCCAGTGG-CG 18060 Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | ||| | |||||| ||||||||||||||||||| ||| ||||||||||| ||||| Sbjct 18059 CTGGTCCTGGTCGAGGTCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTA 18000 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||| ||||| | | | |||| | || ||||| | | || |||| |||||| Sbjct 17999 CATTTCCCAGATCTCCGGGTACTGAATCGGGAACATGCAGAACCGGTCCGGGTTG 17945 Score = 132 bits (146), Expect = 6e-25 Identities = 185/259 (71%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 869186 TCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 869245 |||||| ||||| ||||| |||| || |||||||| | |||||||| |||||| Sbjct 18509 TCGCGA--GATCAACTCGTTCGAGAAGGTCAGACCGGGCATCAACCCGCGCTTTTTGAGC 18452 Query 869246 CAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATG 869305 ||||| || |||||||| || |||||||| ||||| ||||| ||| ||||||| | | | Sbjct 18451 CAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCCTCCACGCAGGCAAAGGCCACG 18392 Query 869306 AGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCC 869365 | ||||| || || || ||| ||| || |||||| || ||||| | |||| Sbjct 18391 ATGCGCTCCGCGAACGTCTCGGAGCC------GTCGATCCAGCGCAGGGCCCACTGGGCC 18338 Query 869366 TTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGG 869425 || || || | || | ||||||| ||| || ||||| || ||| ||| ||| | Sbjct 18337 TTCTTGGCGACGCAGGGGATGGTGTCGACGGCCCGGAAGAGACGGCTCTTCTCGTCCGAG 18278 Query 869426 TCCTTGACATAGGTGTCGA 869444 || || | |||||| |||| Sbjct 18277 TCTTTAATATAGGTCTCGA 18259 Score = 114 bits (126), Expect = 2e-19 Identities = 214/312 (69%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | ||| || || |||||||| |||| || ||| Sbjct 18832 GCCTTCTGGTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATC 18773 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| || ||||| ||| | |||| ||| || |||| | || | Sbjct 18772 AGCTCCATCCAATCAAATGGGTTCTGCGCATCGTAGATCTTCCCGTATCCCAACGCACCC 18713 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | ||| | ||| || || |||||||||||||||| ||| || | ||||||| || | Sbjct 18712 ACCAGCCTGTCAGCCACGAACTCGATGTACTGGCTCATCAGATCACCGTTCATTCCAACT 18653 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | || ||| | || |||| ||| |||||| |||| ||||| || || ||| || | Sbjct 18652 AAGGCGCACGGTAACGCGTCGCACACGAACTCTCTCTCTATCTCAACCGCGTCGCGGACG 18593 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 || || || | || || | | | |||| | ||| | || |||||||||||| || Sbjct 18592 AT-TGACTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGCGAGTAGAGCAGGCACGC 18534 Query 868990 AAAGTCGCAGTG 869001 ||||||||||| Sbjct 18533 GAAGTCGCAGTG 18522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6081873781915424