Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3539 125 6e-24 seq171 91.5 1e-13 >seq3539 Length=40568 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || || |||||| |||| || || ||||| || |||| ||| | Sbjct 16656 AACATGCAAATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGAGGGT 16715 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||||| ||| | | || ||| ||||| || ||||||||| | || ||| Sbjct 16716 AACGATACCATCGACAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGAT 16775 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || || |||| |||| |||||| | |||||||| Sbjct 16776 CAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGATTAT 16835 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||| || || || | ||| ||||||| || ||| | || |||| Sbjct 16836 AACATTCAAAAGGAGTCCACTCTTCACCTGGTGTTGAGGCTGAGGGGAGGAA 16887 >seq171 Length=169594 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329 |||||||| |||||||| || | |||||||||||||| || | ||| || ||| || Sbjct 166268 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTCTGGAAGTGGAAAGCTCT 166327 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | || ||| || ||| |||||||| || | ||| || Sbjct 166328 GAC---ACGATTGATAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCCCCAGAC 166384 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||| | |||| ||| ||||| ||||| ||||||| || ||| | || || || Sbjct 166385 CAGCAGAGATTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTCGCCGACTAT 166444 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || || || ||||| ||||| | | ||||| || || Sbjct 166445 AATATTCAGAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGTGG 166494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411292539876896