Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6231 176 7e-38 >seq6231 Length=25150 Score = 176 bits (194), Expect = 7e-38 Identities = 230/318 (72%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| ||| || |||||||| | |||||||| |||||| Sbjct 18509 TCGCGA--GATCAACTCGTTCGAGAAGGTCAGACCGGGCATCAACCCGCGCTTTTTGAGC 18452 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || || ||||| || |||||||| ||||| ||||| ||| ||||||| | ||| Sbjct 18451 CAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCCTCCACGCAGGCAAAGGCCACG 18392 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | ||||| || || || || ||| || |||||| || ||||||| ||| Sbjct 18391 ATGCGCTCCGCGAACGTCTCGGAGCC------GTCGATCCAGCGCAGGGCCCACTGGGCC 18338 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || || || |||| | ||||||| ||| || ||||| || ||||||| ||| | Sbjct 18337 TTCTTGGCGACGCAGGGGATGGTGTCGACGGCCCGGAAGAGACGGCTCTTCTCGTCCGAG 18278 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 || || | ||||| |||| ||| || ||| |||| || |||||||| || || ||| Sbjct 18277 TCTTTAATATAGGTCTCGAGGAGAAGGCTGTACATCTCGGAATGGATGTTCTCAATCGCG 18218 Query 794647 ATCTGGAAGCCATAAAAG 794664 ||||||||||| || ||| Sbjct 18217 ATCTGGAAGCCGTAGAAG 18200 Score = 174 bits (192), Expect = 2e-37 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || || ||||||||||||||||||||||| || ||||| ||||||||| Sbjct 18193 GCCTCCGAGACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGAACGATGCCG 18134 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| |||| ||||| ||| | | | || Sbjct 18133 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCCCCCGGGGTTAGG 18074 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||||| | ||| | ||||||||||||||||||||||||| || || ||| Sbjct 18073 GTCTCCCAGTGGCGCTGGTCCTGGTCGAGGTCGACCTCCTCGGCGGTCCAGAACGACGCC 18014 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| |||||||| ||||| ||| |||| | || ||||||| Sbjct 18013 TCGGCCTTCTTGTACATTTCCCAGATCTCCGGGTACTGAATCGGGAACA 17965 Score = 86.0 bits (94), Expect = 1e-10 Identities = 210/313 (67%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || | | ||| || || |||||||| |||| || |||| ||||||| Sbjct 18823 TACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCATC 18764 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 || || ||||| || |||| |||| || | || | || | | ||| | | Sbjct 18763 CAATCAAATGGGTTCTGCGCATCGTAGATCTTCCCGTATCCCAACGCACCCACCAGCCTG 18704 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CAC 794086 || || ||||| || |||||||||| ||| || | ||||||| || | | || ||| Sbjct 18703 TCAGCCACGAACTCGATGTACTGGCTCATCAGATCACCGTTCATTCCAACTAAGGCGCAC 18644 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT---CTG 794143 || | || |||| || |||||| |||| ||||| || || ||| || ||| || Sbjct 18643 GGTAA-CGCGTCGCACACGAACTCTCTCTCTATCTCAACCGCGTCGCGGACGATTGACTT 18585 Query 794144 CCTGGGCACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | |||| || |||| ||| | || |||||||||||| || ||||| Sbjct 18584 CACGCGCTCCTCGGT-GA--GCTTCATCCGGAGGAGCGAGTAGAGCAGGCACGCGAAGTC 18528 Query 794204 GCAATGCAGACCT 794216 ||| || || ||| Sbjct 18527 GCAGTGTAGGCCT 18515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7883496651155808