Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3539 131 1e-25 seq14767 91.5 1e-13 seq400 89.7 4e-13 seq181 89.7 4e-13 seq171 89.7 4e-13 seq459 87.8 1e-12 seq35007 84.2 2e-11 seq4683 84.2 2e-11 seq55 84.2 2e-11 seq9104 82.4 6e-11 >seq3539 Length=40568 Score = 131 bits (144), Expect = 1e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||||||||| || |||||| |||| || || ||||| || |||| |||| | Sbjct 16656 AACATGCAAATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGAGGGT 16715 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| ||| | | || ||| ||||| |||||||||||| | || ||| Sbjct 16716 AACGATACCATCGACAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGAT 16775 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || |||||||| || | ||| || || || |||| || | || ||| | ||||| || Sbjct 16776 CAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGATTAT 16835 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATA 107787 ||||||||||||||||| || | ||| |||||||||| || | || |||| || Sbjct 16836 AACATTCAAAAGGAGTCCACTCTTCACCTGGTGTTGAGGCTGAGGGGAGGAACTA 16890 >seq14767 Length=9121 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||||||||| | ||||| |||| | || ||||| || | || |||| Sbjct 1239 AACATGCAAATTTTCATGAAAACACTAACTAGGAAGACCATCACTCTTGAGGTTGAGGGC 1180 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | ||||| ||| | | || ||| ||||| | ||||| |||| | || ||| Sbjct 1179 AGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGCTAAAGTAGGCATCCCTCCTGAT 1120 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || |||||||| |||| ||| || || || |||| || | |||||| | ||||| || Sbjct 1119 CAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAAAACTCTTGCGGATTAT 1060 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATA 107787 ||||||| ||||||||| || | | | | || |||||| || | || |||| || Sbjct 1059 AACATTC-AAAGGAGTCGACTCTTCCCCTAGTATTGAGACTGAGGGGAGGAACTA 1006 >seq400 Length=129899 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||| || ||||| |||||||| || || || | || ||| ||| Sbjct 14479 ATGCAGGTTTTTGTGAAGACTTTGACAGGCAAGACAATCACTCTGGAGGTTGAGAGCTC- 14421 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || ||| ||||||| || |||||||| | || ||| || Sbjct 14420 CGATACCATTGACAATGTCAAAGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGACCA 14361 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || || |||||||| | | || |||| || || || Sbjct 14360 GCAGAGGTTGATCTTTGCCGGAAAGCAACTGGAGGATGGCCGCACTTTGGCTGATTATAA 14301 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| ||||||||||| Sbjct 14300 CATTCAGAAGGAGTCTAC 14283 >seq181 Length=165841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| ||||| || || || ||||| ||| | || |||| ||| Sbjct 158884 ATGCAGATCTTCGTCAAGACTTTGACGGGGAAGACCATCACCCTGGAGGTGGAGAGCTC- 158826 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| ||||| || || | ||| |||||| Sbjct 158825 CGACACGATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGGATTCCCCCGGATCA 158766 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||| ||||||| | || || ||||||| ||||| Sbjct 158765 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCAGGACTCTGGCGGATTACAA 158706 Query 107735 CATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 158705 TATCCAGAAGGAGTCCAC 158688 >seq171 Length=169594 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG-AGGCTGG 107614 |||||||| |||||||| || | || ||||||||||| || | ||| || | ||| Sbjct 166268 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTCTGGAAGTGGAAAGCT-C 166326 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || ||| || ||| || ||||| || | ||| || || Sbjct 166327 TGACACGATTGATAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCCCCAGACCA 166386 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| ||| ||||| ||||| ||||| | | ||| | || ||||| || Sbjct 166387 GCAGAGATTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTCGCCGACTATAA 166446 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || ||||| ||||| Sbjct 166447 TATTCAGAAGGAGTCCACTCTGCACTTGGTG 166477 >seq459 Length=124062 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || || || ||| | || ||| ||| Sbjct 120585 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACCTTGGAGGTGGAAAGCTC 120644 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || || |||||| || ||||||||| | ||| || | Sbjct 120645 T-GATACAATTGACAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGACC 120703 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || || ||||| || || | | ||| |||| ||||||| Sbjct 120704 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTACA 120763 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| |||||||| || |||| ||||| Sbjct 120764 ACATTCAGAAGGAGTCGACTCTGCATTTGGTG 120795 >seq35007 Length=2034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || |||||||| || || || | || ||| ||| Sbjct 1666 ATGCAGATATTTGTCAAGACCTTGACAGGCAAGACAATCACTTTGGAGGTTGAGAGCTC- 1724 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || ||| ||||||| || || ||||| | || ||| || Sbjct 1725 CGATACCATTGACAATGTCAAAGCAAAGATTCAAGACAAGGAAGGAATCCCACCGGACCA 1784 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || || |||||||| | | || |||| || || || Sbjct 1785 GCAGAGGTTGATCTTTGCCGGAAAGCAACTGGAGGATGGCCGCACTTTGGCTGATTATAA 1844 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| ||||||||||| Sbjct 1845 CATTCAGAAGGAGTCTAC 1862 >seq4683 Length=32477 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| || ||||| ||||| || | || |||| ||| Sbjct 3780 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCTC- 3838 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | | ||| |||||| ||||| || || | || |||||| Sbjct 3839 CGATACCATTGACAATATCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCGCCGGATCA 3898 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || || ||||||| | ||| |||| ||||| || Sbjct 3899 GCAGAGGCTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGTACACTGGCCGACTATAA 3958 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 || || || |||||||| ||||| Sbjct 3959 TATCCAGAAAGAGTCTACCCTGCAC 3983 >seq55 Length=242041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || || || | || ||||| || || ||| | || |||| || Sbjct 38404 ATGCAAATTTTCGTGAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 38345 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| ||||| |||||| | ||| || ||| Sbjct 38344 GACACCATTGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 38285 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | | ||| | || ||||||||| Sbjct 38284 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTAGCTGACTACAAC 38225 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || ||||||||||| || | ||| |||| Sbjct 38224 ATCCAAAAGGAGTCAACCCTCCACTTGGT 38196 >seq9104 Length=17150 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| ||||||| || || || ||| | || |||| | Sbjct 3302 AAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATCACCCTGGAGGTGGAGTCG 3361 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || || |||||| || || || ||| | || ||| Sbjct 3362 TCGGACACCATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCGGAC 3421 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | || || || ||||| ||||||| | ||| | || |||||| Sbjct 3422 CAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTAC 3481 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| || | ||| ||||| Sbjct 3482 AACATCCAGAAGGAGTCCACTCTCCACCTGGTG 3514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397380138459808