Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3539 113 7e-20 seq5329 100 4e-16 seq382 98.7 2e-15 >seq3539 Length=40568 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| |||| || || || || ||| | || || || ||||| Sbjct 16660 TGCAAATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGAGGGTAACG 16719 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| || || || |||||||||||| || || ||||||| Sbjct 16720 ATACCATCGACAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGATCAAC 16779 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || ||||| || ||| ||||| | | |||||||| | Sbjct 16780 AGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGATTATAACA 16839 Query 146212 TACAAAAAGAATCGACT 146228 | ||||| || || ||| Sbjct 16840 TTCAAAAGGAGTCCACT 16856 Score = 102 bits (112), Expect = 1e-16 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||||| |||||| |||| | || || || ||| |||| || ||| | Sbjct 20038 TGCAAATTTTCATGAAAACACTAACTAGGAAGACCATCACTCTTGAGGTTGAAGGCCGTG 20097 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | || | ||||| ||| || || || |||||||||||| || || ||||||| Sbjct 20098 ATGCCATCGACAATGTCAAAGCCAAGATCCAGGCTAAAGAAGGCATCCCTCCTGATCAAC 20157 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| |||||||| || || ||||| || ||| ||||| | | ||| |||| | Sbjct 20158 AGAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGATGATAACA 20217 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | | ||| || |||||| | || ||| ||| Sbjct 20218 TTC-AAAGGAGTCGACTCTTCACCTAGCATT 20247 >seq5329 Length=29078 Score = 100 bits (110), Expect = 4e-16 Identities = 150/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||||| |||||| |||| | || || | ||| |||| || || | | Sbjct 25942 TGCAAATTTTCATGAAAACACTAACTAGGAAGACCACCACTCTTGAGGTTGAGGGCAGTG 25883 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| || || || |||||||||||| || || ||||||| Sbjct 25882 ATACCATCGACAATGTCAAAGCCAAGATCCAGGCTAAAGAAGGCATCCCTCCTGATCAAC 25823 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| |||||||| || || ||||| || ||| ||||| | | |||||||| | Sbjct 25822 --AGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGATTATAACA 25765 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | | ||| || |||||| | || || |||| Sbjct 25764 TTC-AAAGGAGTCGACTCTTCACCTACTATT 25735 >seq382 Length=131996 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 146126 TAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 ||| |||||||| || || ||||| || ||||| |||||||| ||||| ||||| || || Sbjct 52754 TAAGGAAGGCATCCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAAGA 52813 Query 146186 TAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | | |||| | ||||||||||||| |||||||| || ||| |||| | || || | Sbjct 52814 TGGTCGAACTCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTTTTGAG 52873 Query 146246 ATTAAGAGGAGG 146257 || || ||||| Sbjct 52874 GTTGAGGGGAGG 52885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783140917226240