Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6231 100 3e-16 seq55 93.3 4e-14 seq3539 86.0 6e-12 >seq6231 Length=25150 Score = 100 bits (110), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || ||||| ||| ||||||||||||||| || |||||||| || ||| ||| Sbjct 18321 CCCTGCGTCGCCAAGAAGGCCCAGTGGGCCCTGCGCTGGATCGACGGCT---CCGAGACG 18377 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTT 46880 | || |||||||| ||||| || || || || || | || || ||||| || || Sbjct 18378 TTCGCGGAGCGCATCGTGGCCTTTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCTTC 18437 Query 46881 GCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAG 46940 ||| || |||| | |||| || | ||||| || ||||| ||| |||||| Sbjct 18438 TGCGCGATATTTTGGCTCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACGAG 18497 Query 46941 TTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 ||||||||||| || ||||| |||||| ||||| ||||| || Sbjct 18498 TTGATCTCGCGAGATGAAGGCCTACACTGCGACTTCGCGTGCCT 18541 >seq55 Length=242041 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGG 131960 ||||| || | |||||| || | | ||||||| ||||| ||||||||||| ||| | || Sbjct 38183 ACGCAGACGAAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCT-AGGG 38241 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 | || ||| || ||||| || || | | |||| |||||||| || ||||| || |||| Sbjct 38242 TTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGC 38301 Query 132021 CTTCTTTATC 132030 |||| ||||| Sbjct 38302 CTTCCTTATC 38311 >seq3539 Length=40568 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCGGA 131988 ||||| ||||||||||| || || | || | || | |||||| | || || || | Sbjct 16852 GACTCCTTTTGAATGTTATAATC-CGCAAGAGTTCTGCCATCTTCCAATTGCTTGCCAGC 16794 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| || | ||||||||| ||||| |||||||||||||| || || ||| | Sbjct 16793 AAAGATCAGTCTCTGTTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCTTTGAC 16734 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | |||||| | ||| || |||| || | || || ||||| |||||||| Sbjct 16733 ATTGTCGATGGTATCGTTACCCTCAACCTCGAGAGTGATGGTCTTCCCAGTTAGAGTTTT 16674 Query 132109 TATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 16673 CACGAAAATTTGCATG 16658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474777009457920