Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3539 123 2e-23 seq181 87.8 2e-12 seq14767 86.0 6e-12 >seq3539 Length=40568 Score = 123 bits (136), Expect = 2e-23 Identities = 175/245 (71%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 ||||||||||||| | || || ||||| |||| || || | ||||| |||| || || Sbjct 16652 AAACAACATGCAAATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGA 16711 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 | |||||||| ||||| | || ||| || || |||||||| || || || || Sbjct 16712 GGGTAACGATACCATCGACAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATCCCTCC 16771 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 ||||| || ||||| || | | ||||| ||| | ||||||| |||| | | || Sbjct 16772 TGATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGA 16831 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA-AAT 25406 ||| || |||||||| || ||||| |||| | ||||| || |||| ||||||| || Sbjct 16832 TTATAACATTCAAAAGGAGTCCACTCTTCACCTGGTGTTGAGGCTGAGGGGAGGAACTAT 16891 Query 25407 GATCA 25411 ||||| Sbjct 16892 GATCA 16896 Score = 82.4 bits (90), Expect = 7e-11 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 ||||||||||||| | || | |||||| |||| | || | ||||| | || || || Sbjct 20030 AAACAACATGCAAATTTTCATGAAAACACTAACTAGGAAGACCATCACTCTTGAGGTTGA 20089 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 || | ||| | ||||| | || ||| || || | |||||| || || || || Sbjct 20090 AGGCCGTGATGCCATCGACAATGTCAAAGCCAAGATCCAGGCTAAAGAAGGCATCCCTCC 20149 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 ||||| || ||||| |||| | ||||| ||| | ||||||| |||| | | || Sbjct 20150 TGATCAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGA 20209 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA-AAT 25406 | | || |||| ||| || || || |||| ||| || || |||| ||||||| || Sbjct 20210 TGATAACATTC-AAAGGAGTCGACTCTTCACCTAGCATTGAGGCTGAGGGGAGGAACTAT 20268 Query 25407 GATC 25410 |||| Sbjct 20269 GATC 20272 >seq181 Length=165841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | ||||| || ||||||| |||| || || | Sbjct 136983 CATGCAGATCTTCGTCAAAACTCTCACCGGCAAGACGATCACTCTCGAGGTTGAGAGCTC 136924 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || ||||| | || || ||||| ||||| || || || || || || || Sbjct 136923 CGACACCATCGATAACGTCAAGGCTAAAATCCAGGATAAGGAAGGAATTCCCCCGGACCA 136864 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | || ||| || ||||||||||| | |||| || ||||||||| Sbjct 136863 GCAGAGGTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCTCGCCGATTACAA 136804 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || |||||||| | || || || |||| |||| || || Sbjct 136803 TATCCAGAAGGAATCCACTTTGCACTTGGTTCTAAGGCTGAGGGGTGG 136756 >seq14767 Length=9121 Score = 86.0 bits (94), Expect = 6e-12 Identities = 167/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 ||||||||||||| | || | |||||| |||| | || | ||||| | || || || Sbjct 1243 AAACAACATGCAAATTTTCATGAAAACACTAACTAGGAAGACCATCACTCTTGAGGTTGA 1184 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 | || ||||| ||||| | || ||| || || | ||||| || || || || Sbjct 1183 GGGCAGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGCTAAAGTAGGCATCCCTCC 1124 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 ||||| || ||||| |||| | ||||| ||| | ||||||| | || | | || Sbjct 1123 TGATCAACAGAGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAAAACTCTTGCGGA 1064 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA-AAT 25406 ||| || |||| ||| || || || ||| |||| || ||| |||| ||||||| || Sbjct 1063 TTATAACATTC-AAAGGAGTCGACTCTTCCCCTAGTATTGAGACTGAGGGGAGGAACTAT 1005 Query 25407 GATC 25410 |||| Sbjct 1004 GATC 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443381498711040