Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6231 338 9e-87 >seq6231 Length=25150 Score = 338 bits (374), Expect = 9e-87 Identities = 415/562 (74%), Gaps = 10/562 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| | |||||| |||| || | ||||||| || | |||| | | Sbjct 17928 GAGCCGCTGCTGATGGCCAACCCGGACCGGTTCTGCATGTTCCCGATTCAGTACCCGGAG 17987 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| || ||||||||||| || || ||||||||||||||||||||||| Sbjct 17988 ATCTGGGAAATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGACCT 18046 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 || | ||| | |||||||| | | || | | | ||| || ||||||| || Sbjct 18047 CGACCAGGACCAGCGCCACTGGGAGACCCTAACCCCGGGGGAGAAGCACTTCATCACTCA 18106 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||||||||| || ||||||| ||| |||||||| |||||| || |||||||||| Sbjct 18107 CGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTTCTCGAGAATCTCGCCGGCCGCT 18165 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||| ||||| || | | ||||| ||| || ||||| ||||||||||| || | Sbjct 18166 TCATGAAGGAGGTACAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTG 18225 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | |||||||| || || | ||| || || |||| ||||| | || ||| ||| || Sbjct 18226 AGAACATCCATTCCGAGATGTACAGCCTTCTCCTCGAGACCTATATTAAAGACTCGGACG 18285 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| || ||||| || ||| ||||||| | || | || || |||||| | | Sbjct 18286 AGAAGAGCCGTCTCTTCCGGGCCGTCGACACCATCCCCTGCGTCGCCAAGAAGGCCCAGT 18345 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCT 1456194 |||| || |||||| || ||| ||| || || || ||||| |||| | || Sbjct 18346 GGGCCCTGCGCTGGATC------GACGGCTCCGAGACGTTCGCGGAGCGCATCGTGGCCT 18399 Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 ||||| |||| ||||| ||||| |||||||| || |||||||| || ||||||||||| | Sbjct 18400 TTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATATTTTGGCTCAAAA 18459 Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275 ||||||| | ||||||||||| Sbjct 18460 AGCGCGGGTTGATGCCCGGTCT 18481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7148116379731264