Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12296 111 2e-19 seq6231 109 8e-19 seq193897 91.5 2e-13 >seq12296 Length=11864 Score = 111 bits (122), Expect = 2e-19 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA--CTCTCAGCATCGGAATAATA 69807 ||| |||||||| | || | |||||| | |||||| | ||| |||||| ||| | || Sbjct 7255 TCCCCCCTGATCAACATAACGGGCAGTATCATTATAAAAACTCGCAGCATTGGACTGATG 7196 Query 69808 CCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATA 69867 ||| | ||| | |||||||||||| ||||||||| || | | ||||| || || | Sbjct 7195 CCAATGGATGTCCCATTTGTTCCATGAATATAACTGCCAGTGGTACGAATGTTGTGAACA 7136 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 || | ||| ||||| || || ||| ||| | |||||| ||||| || |||||| Sbjct 7135 GAGACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAGGTATCATAT 7076 Query 69928 ATACCCTCTATGCTATCATCTAT 69950 || | || |||||||||||||| Sbjct 7075 ATGACTTCGATGCTATCATCTAT 7053 >seq6231 Length=25150 Score = 109 bits (120), Expect = 8e-19 Identities = 232/341 (68%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || |||||||| ||||||| || || ||||| || || || || Sbjct 18539 GCACGCGAAGTCGCAGTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 18480 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| | || |||||||||||||||||||| || ||| ||| | || || |||| Sbjct 18479 ACCGGGCATCAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAGAAGCTCCCCGAGAAGA 18421 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTATGT 39793 |||| || || || ||||| || || | | ||| || ||| | | | | Sbjct 18420 AGATCCCCTCCACGCAGGCAAAGGCCACGATGCGCTCCGCG-AACGTCTCGGAGCCGTCG 18362 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| | | ||||| | || ||||| || || || || || || | || Sbjct 18361 ATCCAGCGCAGGGCCCACTGGGCCTTCTTGGCGACGCAGGGGATGGTGTCGACGGCCCGG 18302 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 |||||| || || || ||||||| ||| || || | | || || ||||| Sbjct 18301 AAGAGACGGCTCTTCTCGTCCGAGTCTTTAATATAGGTCTCGAGGAGAAGGCTGTACATC 18242 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || ||||||||||| |||||||| ||||| || ||||| || Sbjct 18241 TCGGAATGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAA 18201 >seq193897 Length=263 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | ||||| | |||| | |||| ||||||||||| || || Sbjct 122 TCCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGTAGCATCGGAATGATGCC 181 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| ||||||||| || | || ||||| || || ||| Sbjct 182 ATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTGAACAGA 241 Query 69870 TAGACCTATTCCTCCTGC 69887 | ||| ||||| || || Sbjct 242 GACACCAATTCCCCCAGC 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684265300174080